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TAEK SOON LEE
Research Focus Taek Soon Lee earned a B.S. in Chemistry at Seoul National University (Korea) and a Ph.D. in Chemistry at Stanford University in 2006 studying type II aromatic polyketide synthases with Professor Chaitan Khosla. After a postdoctoral training at University of California with Professor Jay D. Keasling, Dr. Lee became a Scientist at LawrenceCLUSTERCAD
ClusterCAD provides a database and web-based toolkit designed to enable researchers to harness the potential of type I modular polyketide synthases for combinatorial biosynthesis. AINDRILA MUKHOPADHYAYJENNY MORTIMER
DIVA - DESIGN IMPLEMENTATION VERIFICATION AUTOMATION PLATFORM Remember Me. Login to DIVAICE USER MANUAL
The Inventory of Composable Elements (ICE) software platform is a web based platform for managing information about biulogical parts andsequences.
HOME - JBEI.ORGNEWSRESEARCH OVERVIEWLIFE-CYCLE, ECONOMICS AND AGRONOMYFEEDSTOCKSDECONSTRUCTION The Joint BioEnergy Institute. Inside JBEI’s Emeryville laboratories, researchers are using the latest tools in molecular biology, chemical engineering, computational and robotic technologies to transform biomass into biofuels and bioproducts. ICE - INVENTORY OF COMPOSABLE ELEMENTS - JBEI The Joint BioEnergy Institute's public Inventory of Composable Elements (ICE) is an open source registry software and platform for managing information about biological parts. It is capable of recording information about “legacy” parts such as plasmids, microbial host strains, and Arabidopsis seeds. ICE is built upon the idea of a Web of Registries, and thus provides strong support for SUMMER SCIENCE INTENSIVE: ICLEM The Introductory College Level Experience in Microbiology (iCLEM) is an eight-week paid summer research program for high-potential, low-income high school sophomores and juniors.TAEK SOON LEE
Research Focus Taek Soon Lee earned a B.S. in Chemistry at Seoul National University (Korea) and a Ph.D. in Chemistry at Stanford University in 2006 studying type II aromatic polyketide synthases with Professor Chaitan Khosla. After a postdoctoral training at University of California with Professor Jay D. Keasling, Dr. Lee became a Scientist at LawrenceCLUSTERCAD
ClusterCAD provides a database and web-based toolkit designed to enable researchers to harness the potential of type I modular polyketide synthases for combinatorial biosynthesis. AINDRILA MUKHOPADHYAYJENNY MORTIMER
DIVA - DESIGN IMPLEMENTATION VERIFICATION AUTOMATION PLATFORM Remember Me. Login to DIVAICE USER MANUAL
The Inventory of Composable Elements (ICE) software platform is a web based platform for managing information about biulogical parts andsequences.
PEOPLE - JBEI.ORG
Bringing together talented teams of leading researchers from around the nation and the world to accelerate the process of discovery.RESEARCHERS
The Joint BioEnergy Institute. Work with talented researchers from around the nation and the world to accelerate the process ofdiscovery.
ICLEM EXPERIENCE
Created in 2008, the Introductory College Level Experience in Microbiology (iCLEM) program provides Bay Area youth from communities traditionally underrepresented in the sciences with paid research internships in state-of-the-art labs. iCLEM targets high potential, low-income high school students who have a deep interest in science or engineering and for whom this program would provide theSEEMA SINGH
Research Focus Development of efficient, affordable and scalable pretreatment technologies. Projects Mechanistic understanding and optimization of Ionic Liquid Pretreatment Discovery and Screening of new Ionic Liquids Impact of modified feedstocks, densification and blending Improving Ionic Liquid pretreatment process economics Featured Media Scientists Harness CO2 to Consolidate Biofuel DIVA - DESIGN IMPLEMENTATION VERIFICATION AUTOMATION PLATFORM Remember Me. Login to DIVAICE USER MANUAL
The Inventory of Composable Elements (ICE) software platform is a web based platform for managing information about biulogical parts andsequences.
HENRIK VIBE SCHELLER Henrik Vibe Scheller is a senior scientist with the Lawrence Berkeley National Laboratory, an Adjunct Professor with the Department of Plant and Microbial Biology at the University of California Berkeley, and with the Department of Plant Biology and Biotechnology at the University of Copenhagen in Denmark. He is an authority on enzymes involved in cell wall biosynthesis. DIVA - DESIGN IMPLEMENTATION VERIFICATION AUTOMATION PLATFORM DIVA - Design Implementation Verification Automation platformGOLDEN GATE
Here is the Golden Gate DNA assembly protocol (adapted from Engler 2008 and Engler 2009): Here is the actual word document of the above protocol (DNA Assembly Protocols Golden-gate.docx): DEVICEEDITOR INSTALLATION Users will not need to install DeviceEditor on their own computer, since the public web interface for the software is accessible at: https://j5.jbei.org/. HOME - JBEI.ORGNEWSRESEARCH OVERVIEWLIFE-CYCLE, ECONOMICS AND AGRONOMYFEEDSTOCKSDECONSTRUCTION The Joint BioEnergy Institute. Inside JBEI’s Emeryville laboratories, researchers are using the latest tools in molecular biology, chemical engineering, computational and robotic technologies to transform biomass into biofuels and bioproducts. SUMMER SCIENCE INTENSIVE: ICLEM The Introductory College Level Experience in Microbiology (iCLEM) is an eight-week paid summer research program for high-potential, low-income high school sophomores and juniors.TAEK SOON LEE
Research Focus Taek Soon Lee earned a B.S. in Chemistry at Seoul National University (Korea) and a Ph.D. in Chemistry at Stanford University in 2006 studying type II aromatic polyketide synthases with Professor Chaitan Khosla. After a postdoctoral training at University of California with Professor Jay D. Keasling, Dr. Lee became a Scientist at Lawrence ICE - INVENTORY OF COMPOSABLE ELEMENTS - JBEI The Joint BioEnergy Institute's public Inventory of Composable Elements (ICE) is an open source registry software and platform for managing information about biological parts. It is capable of recording information about “legacy” parts such as plasmids, microbial host strains, and Arabidopsis seeds. ICE is built upon the idea of a Web of Registries, and thus provides strong support forCLUSTERCAD
ClusterCAD provides a database and web-based toolkit designed to enable researchers to harness the potential of type I modular polyketide synthases for combinatorial biosynthesis. We provide tools to identify a truncated PKS as a starting point for domain exchange experiments given a small molecule target, and to select subunits ascatalytic
JENNY MORTIMER
AINDRILA MUKHOPADHYAY HENRIK VIBE SCHELLERICE USER MANUAL
ICE User Manual. The Inventory of Composable Elements (ICE) software platform is a web based platform for managing information about biulogical parts and sequences. Use this manual to learn about the features available to users of the platform through it's web interface. The application makes the same functionality available viathe REST API .
SEQUENCES LIST FILE AND ZIPPED SEQUENCES FILE The sequences list file is a CSV file that contains a list of all of the source/template sequences from which DNA parts will be defined. The first line in the file is a header line that does not contain sequence file information, but rather just serves to name the columns HOME - JBEI.ORGNEWSRESEARCH OVERVIEWLIFE-CYCLE, ECONOMICS AND AGRONOMYFEEDSTOCKSDECONSTRUCTION The Joint BioEnergy Institute. Inside JBEI’s Emeryville laboratories, researchers are using the latest tools in molecular biology, chemical engineering, computational and robotic technologies to transform biomass into biofuels and bioproducts. SUMMER SCIENCE INTENSIVE: ICLEM The Introductory College Level Experience in Microbiology (iCLEM) is an eight-week paid summer research program for high-potential, low-income high school sophomores and juniors.TAEK SOON LEE
Research Focus Taek Soon Lee earned a B.S. in Chemistry at Seoul National University (Korea) and a Ph.D. in Chemistry at Stanford University in 2006 studying type II aromatic polyketide synthases with Professor Chaitan Khosla. After a postdoctoral training at University of California with Professor Jay D. Keasling, Dr. Lee became a Scientist at Lawrence ICE - INVENTORY OF COMPOSABLE ELEMENTS - JBEI The Joint BioEnergy Institute's public Inventory of Composable Elements (ICE) is an open source registry software and platform for managing information about biological parts. It is capable of recording information about “legacy” parts such as plasmids, microbial host strains, and Arabidopsis seeds. ICE is built upon the idea of a Web of Registries, and thus provides strong support forCLUSTERCAD
ClusterCAD provides a database and web-based toolkit designed to enable researchers to harness the potential of type I modular polyketide synthases for combinatorial biosynthesis. We provide tools to identify a truncated PKS as a starting point for domain exchange experiments given a small molecule target, and to select subunits ascatalytic
JENNY MORTIMER
AINDRILA MUKHOPADHYAY HENRIK VIBE SCHELLERICE USER MANUAL
ICE User Manual. The Inventory of Composable Elements (ICE) software platform is a web based platform for managing information about biulogical parts and sequences. Use this manual to learn about the features available to users of the platform through it's web interface. The application makes the same functionality available viathe REST API .
SEQUENCES LIST FILE AND ZIPPED SEQUENCES FILE The sequences list file is a CSV file that contains a list of all of the source/template sequences from which DNA parts will be defined. The first line in the file is a header line that does not contain sequence file information, but rather just serves to name the columnsPEOPLE - JBEI.ORG
The Joint BioEnergy Institute. JBEI functions as an incubator for scientific discovery bringing together the best and brightest researchers from around the country and the globe.RESEARCHERS
The Joint BioEnergy Institute. Work with talented researchers from around the nation and the world to accelerate the process ofdiscovery.
ICE - INVENTORY OF COMPOSABLE ELEMENTS - JBEI The Joint BioEnergy Institute's public Inventory of Composable Elements (ICE) is an open source registry software and platform for managing information about biological parts. It is capable of recording information about “legacy” parts such as plasmids, microbial host strains, and Arabidopsis seeds. ICE is built upon the idea of a Web of Registries, and thus provides strong support forICLEM EXPERIENCE
Created in 2008, the Introductory College Level Experience in Microbiology (iCLEM) program provides Bay Area youth from communities traditionally underrepresented in the sciences with paid research internships in state-of-the-art labs. iCLEM targets high potential, low-income high school students who have a deep interest in science or engineering and for whom this program would provide the JBEI PROJECT RECEIVES TECHNOLOGY COMMERCIALIZATION FUNDING The Joint BioEnergy Institute. Four Berkeley Lab projects, including a project at the Joint BioEnergy Institute (JBEI), were awarded $1 million from the Department of Energy’s (DOE’s) Technology Commercialization Fund (TCF) to further collaborative research with industry partners on biofuels, bioproducts, energy microgrid technology, and renewable energy technology. FREQUENTLY ASKED QUESTIONS Frequently Asked Questions¶ How do I get data into EDD?¶ The Experiment Data Depot (EDD) imports data in two steps. (Fig. 1) Experiment Description input: this file describes your experiment design so EDD knows how to store all your data, and how it is related to your strains and samples (see below for more information).. Data input: different types of data can be added in several successiveSEEMA SINGH
Seema Singh is a biophysicist and a guest senior scientist with the JBEI Deconstruction Research Division & a director of Biomass Pretreatment. She is a distinguished member of the technical staff in Biomass Science and Conversion Technologies Department at Sandia National laboratories, CA.GOLDEN GATE
Here is the Golden Gate DNA assembly protocol (adapted from Engler 2008 and Engler 2009): Here is the actual word document of the above protocol (DNA Assembly Protocols Golden-gate.docx): DIVA - DESIGN IMPLEMENTATION VERIFICATION AUTOMATION PLATFORM DIVA - Design Implementation Verification Automation platform. User IDRegister.
DIVA - DESIGN IMPLEMENTATION VERIFICATION AUTOMATION PLATFORM DIVA - Design Implementation Verification Automation platform Skip to main contentHome
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