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INDICOV - IGIB
IndiCoV is a comprehensive resource for SARS-CoV genomes and variants from India. The resource provides a searchable interface for genomes, genomic variants and variant annotations for the SARS-CoV-2 isolates from India. The variant positions are based on the SARS-nCoV-2 reference genome (Wuhan-Hu-1 reference genome ; Genbank NC_045512) CIRCAD | CIRCRNAS ASSOCIATED WITH DISEASES Cite this resource: Mercy Rophina, Disha Sharma, Mukta Poojary and Vinod Scaria.(2020) circad: a manually curated database of circular RNAs associated with diseases.Database Accepted (2020) CLINGEN DATA AND RESOURCES FOR CLINICAL GENOMICS / CSIR About almena. almena is a comprehensive resource of genetic variants in Middle East and North Africa. The present version of the database provides information on over 26 million variants derived from integration of multiple whole genome and whole exome studies from theregion.
BGVAR | BLOOD GROUP ASSOCIATED GENOMIC VARIANT RESOURCE BGvar is a comprehensive compilation of human blood group alleles belonging to International Society of Blood Transfusion (ISBT) approved human blood group systems. The resource integrates relevant data from a range of public sources, encompassing a total of 41 human group systems (updated till January, 2021), 332 antigens, 1672approved alleles.
VITIVAR: HOME
Browse Database Search Database. About VitiVar. Vitiligo is a complex skin depigmentation disorder characterized by the patchy loss of skin pigmentation. Because of its striking appearance it has a huge psycho-social impact on patient’s quality of life. With a prevalence rate of around 1% worldwide, several factors have been found to be LNCRNOME | LONG NONCODING RNA KNOWLEDGEBASE About lncRNome lncRNome is a comprehensive searchable biologically oriented knowledgebase for long noncoding RNAs in Humans. The resource hosts information on over 17000 long noncoding RNAs inT2DIACOD
T2DiACoD is a comprehensive web based platform which provides curated and integrated information about the genes involved in development and progression of Type 2 Diabetes Mellitus.ZFLNCRNAPEDIA
zflncRNApedia is a manually curated and comprehensive resource for long noncoding RNAs in zebrafish (Danio rerio). Apart from the genomic co-ordinates of the lncRNAs, the zflncRNApedia resource also provides information on expression levels across 15 distinct data-sets encompassing developmental stages and adult tissues, derived from Pauli et. al. (2012), Ulitsky et. al. (2011), and Kaushik et HGVTB|DATABASE FOR HUMAN GENES AND GENETIC VARIANTS HGVID rsID Gene P-Value Odds Ratio Geographic Location Pathogenicity Pubmed ID; HGV1: rs3730358: AKT1: 0.043 _ China: Non-Pathogenic: X. Wang, Z. Cao, et. al FUNGALRV: ADHESIN PREDICTION AND IMMUNOINFORMATICS PORTAL FungalRV provides an adhesin predictor software tool to predict human pathogenic fungal adhesins and adhesin-like proteins. FungalRV also provides a detailed analysis of predicted adhesins and adhesin-like proteins from eight human pathogenic fungal species namely Candida albicans, Candida glabrata, Aspergillus fumigatus, Coccidioidesimmitis
INDICOV - IGIB
IndiCoV is a comprehensive resource for SARS-CoV genomes and variants from India. The resource provides a searchable interface for genomes, genomic variants and variant annotations for the SARS-CoV-2 isolates from India. The variant positions are based on the SARS-nCoV-2 reference genome (Wuhan-Hu-1 reference genome ; Genbank NC_045512) CIRCAD | CIRCRNAS ASSOCIATED WITH DISEASES Cite this resource: Mercy Rophina, Disha Sharma, Mukta Poojary and Vinod Scaria.(2020) circad: a manually curated database of circular RNAs associated with diseases.Database Accepted (2020) CLINGEN DATA AND RESOURCES FOR CLINICAL GENOMICS / CSIR About almena. almena is a comprehensive resource of genetic variants in Middle East and North Africa. The present version of the database provides information on over 26 million variants derived from integration of multiple whole genome and whole exome studies from theregion.
BGVAR | BLOOD GROUP ASSOCIATED GENOMIC VARIANT RESOURCE BGvar is a comprehensive compilation of human blood group alleles belonging to International Society of Blood Transfusion (ISBT) approved human blood group systems. The resource integrates relevant data from a range of public sources, encompassing a total of 41 human group systems (updated till January, 2021), 332 antigens, 1672approved alleles.
VITIVAR: HOME
Browse Database Search Database. About VitiVar. Vitiligo is a complex skin depigmentation disorder characterized by the patchy loss of skin pigmentation. Because of its striking appearance it has a huge psycho-social impact on patient’s quality of life. With a prevalence rate of around 1% worldwide, several factors have been found to be LNCRNOME | LONG NONCODING RNA KNOWLEDGEBASE About lncRNome lncRNome is a comprehensive searchable biologically oriented knowledgebase for long noncoding RNAs in Humans. The resource hosts information on over 17000 long noncoding RNAs inT2DIACOD
T2DiACoD is a comprehensive web based platform which provides curated and integrated information about the genes involved in development and progression of Type 2 Diabetes Mellitus.ZFLNCRNAPEDIA
zflncRNApedia is a manually curated and comprehensive resource for long noncoding RNAs in zebrafish (Danio rerio). Apart from the genomic co-ordinates of the lncRNAs, the zflncRNApedia resource also provides information on expression levels across 15 distinct data-sets encompassing developmental stages and adult tissues, derived from Pauli et. al. (2012), Ulitsky et. al. (2011), and Kaushik et HGVTB|DATABASE FOR HUMAN GENES AND GENETIC VARIANTS HGVID rsID Gene P-Value Odds Ratio Geographic Location Pathogenicity Pubmed ID; HGV1: rs3730358: AKT1: 0.043 _ China: Non-Pathogenic: X. Wang, Z. Cao, et. al FUNGALRV: ADHESIN PREDICTION AND IMMUNOINFORMATICS PORTAL FungalRV provides an adhesin predictor software tool to predict human pathogenic fungal adhesins and adhesin-like proteins. FungalRV also provides a detailed analysis of predicted adhesins and adhesin-like proteins from eight human pathogenic fungal species namely Candida albicans, Candida glabrata, Aspergillus fumigatus, Coccidioidesimmitis
COVID-19 GENOMIC SURVEILLANCE Pangolin Lineage. Copyright©2021 CSIR-Institute of Genomics and Integrative Biology | VS Lab CSIR-Institute of Genomics and Integrative Biology | VS Lab GENETIC EPIDEMIOLOGY OF NOVEL AND EMERGING PATHOGENS IN INDIA COVID-19 Technical Documents. Protocol for Assembly and Analysis of COVID-19 Genomes Poojary et al (2020) Research Reports. Computational Analysis and Phylogenetic clustering of SARS-nCov-2 GenomesALMENA - IGIB
almena is a comprehensive resource of genetic variants in Middle East and North Africa. The present version of the database provides information on over 26 million variants derived from integration of multiple whole genome and whole exome studies from the region.ZFLNCRNAPEDIA
zflncRNApedia is a manually curated and comprehensive resource for long noncoding RNAs in zebrafish (Danio rerio). Apart from the genomic co-ordinates of the lncRNAs, the zflncRNApedia resource also provides information on expression levels across 15 distinct data-sets encompassing developmental stages and adult tissues, derived from Pauli et. al. (2012), Ulitsky et. al. (2011), and Kaushik et HLA SPREAD DATA VISUALIZATION PMID Allele Disease Population Drug Names SNP Class Sentence; 9096: HLA (HLA) connective tissue disease: NA: NA: NABRECAN-DB
BreCAN-DB is DataBase of Breakpoint profiles of CANcer genomes, a repository of personalized Cancer somatic DNA breakpoint profiles mapped using whole genome sequencing data mostly obtained from The Cancer Genome Atlas.It also provides a framework to visualize these breakpoints using a Breakpoints browser, also accessible through navigation bar.In the current release of BreCAN-DB v1.0,ABCB1 HOMEPAGE
ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, White). This protein is a member of the MDR/TAP subfamily. Members of the MDR/TAP subfamily are involved in multidrug resistance. The protein encoded by this gene is an ATP-dependent drug efflux pump for xenobiotic compounds with broad substrate HGVTB|DATABASE FOR HUMAN GENES AND GENETIC VARIANTS The database currently house 98 genes associated with various forms of tuberculosis with 307 variants supported with pertinent patient data, obtained after an exhaustive literature study. 101 of these variations have been found to be exonic and 78 in intronic region. In addition, the database concludes the pathogenicity of the geneticINSACOG DASHBOARD
VoC/VoI Proportions. State Contributions for All Genomes LNCRNOME | LONG NONCODING RNA KNOWLEDGEBASE RNA-Protein (Polycomb Repressive Complex 2 (PRC2) Overexpression: Over expressed in colorectal cancer, breast and liver cancer. This leads to re-targeting of PRC2 which promotes tumor invasion and metastasis. PMID: 22070123, 21463453, 17066261, 20459797, Alternate Transcripts: HSA-LNCT002314.2, HSA-LNCT002314.3, HSA-LNCT002314.4,HSA-LNCT002314.5.
INDICOV - IGIB
IndiCoV is a comprehensive resource for SARS-CoV genomes and variants from India. The resource provides a searchable interface for genomes, genomic variants and variant annotations for the SARS-CoV-2 isolates from India. The variant positions are based on the SARS-nCoV-2 reference genome (Wuhan-Hu-1 reference genome ; Genbank NC_045512) COVID-19 GENOMIC SURVEILLANCE Pangolin Lineage. Copyright©2021 CSIR-Institute of Genomics and Integrative Biology | VS Lab CSIR-Institute of Genomics and Integrative Biology | VS LabZFLNCRNAPEDIA
zflncRNApedia is a manually curated and comprehensive resource for long noncoding RNAs in zebrafish (Danio rerio). Apart from the genomic co-ordinates of the lncRNAs, the zflncRNApedia resource also provides information on expression levels across 15 distinct data-sets encompassing developmental stages and adult tissues, derived from Pauli et. al. (2012), Ulitsky et. al. (2011), and Kaushik et LNCRNOME | LONG NONCODING RNA KNOWLEDGEBASE About lncRNome lncRNome is a comprehensive searchable biologically oriented knowledgebase for long noncoding RNAs in Humans. The resource hosts information on over 17000 long noncoding RNAs inVITIVAR: HOME
Browse Database Search Database. About VitiVar. Vitiligo is a complex skin depigmentation disorder characterized by the patchy loss of skin pigmentation. Because of its striking appearance it has a huge psycho-social impact on patient’s quality of life. With a prevalence rate of around 1% worldwide, several factors have been found to be CLINGEN DATA AND RESOURCES FOR CLINICAL GENOMICS / CSIR About almena. almena is a comprehensive resource of genetic variants in Middle East and North Africa. The present version of the database provides information on over 26 million variants derived from integration of multiple whole genome and whole exome studies from theregion.
T2DIACOD
T2DiACoD is a comprehensive web based platform which provides curated and integrated information about the genes involved in development and progression of Type 2 Diabetes Mellitus.INDICOV - IGIB
IndiCoV is a comprehensive resource for SARS-CoV genomes and variants from India. The resource provides a searchable interface for genomes, genomic variants and variant annotations for the SARS-CoV-2 isolates from India. The variant positions are based on the SARS-nCoV-2 reference genome (Wuhan-Hu-1 reference genome ; Genbank NC_045512) COVID-19 GENOMIC SURVEILLANCE Pangolin Lineage. Copyright©2021 CSIR-Institute of Genomics and Integrative Biology | VS Lab CSIR-Institute of Genomics and Integrative Biology | VS LabZFLNCRNAPEDIA
zflncRNApedia is a manually curated and comprehensive resource for long noncoding RNAs in zebrafish (Danio rerio). Apart from the genomic co-ordinates of the lncRNAs, the zflncRNApedia resource also provides information on expression levels across 15 distinct data-sets encompassing developmental stages and adult tissues, derived from Pauli et. al. (2012), Ulitsky et. al. (2011), and Kaushik et LNCRNOME | LONG NONCODING RNA KNOWLEDGEBASE About lncRNome lncRNome is a comprehensive searchable biologically oriented knowledgebase for long noncoding RNAs in Humans. The resource hosts information on over 17000 long noncoding RNAs inVITIVAR: HOME
Browse Database Search Database. About VitiVar. Vitiligo is a complex skin depigmentation disorder characterized by the patchy loss of skin pigmentation. Because of its striking appearance it has a huge psycho-social impact on patient’s quality of life. With a prevalence rate of around 1% worldwide, several factors have been found to be CLINGEN DATA AND RESOURCES FOR CLINICAL GENOMICS / CSIR About almena. almena is a comprehensive resource of genetic variants in Middle East and North Africa. The present version of the database provides information on over 26 million variants derived from integration of multiple whole genome and whole exome studies from theregion.
T2DIACOD
T2DiACoD is a comprehensive web based platform which provides curated and integrated information about the genes involved in development and progression of Type 2 Diabetes Mellitus.ABCB1 HOMEPAGE
ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, White). This protein is a member of the MDR/TAP subfamily. Members of the MDR/TAP subfamily are involved in multidrug resistance. The protein encoded by this gene is an ATP-dependent drug efflux pump for xenobiotic compounds with broad substrate FUNGALRV: ADHESIN PREDICTION AND IMMUNOINFORMATICS PORTAL FungalRV provides an adhesin predictor software tool to predict human pathogenic fungal adhesins and adhesin-like proteins. FungalRV also provides a detailed analysis of predicted adhesins and adhesin-like proteins from eight human pathogenic fungal species namely Candida albicans, Candida glabrata, Aspergillus fumigatus, Coccidioidesimmitis
LNCRNOME | LONG NONCODING RNA KNOWLEDGEBASE Epigenetic Marks: Genomic Loci: Methylation Position in PBMC Cell line: 47644534: H3K4 Histone Methylation Position in Brain Frontal Cortex: 47645172: H3K4 Histone Methylation Position in COVID-19 GENOMIC SURVEILLANCE Pangolin Lineage. Copyright©2021 CSIR-Institute of Genomics and Integrative Biology | VS Lab CSIR-Institute of Genomics and Integrative Biology | VS LabVITIVAR: HOME
Browse Database Search Database. About VitiVar. Vitiligo is a complex skin depigmentation disorder characterized by the patchy loss of skin pigmentation. Because of its striking appearance it has a huge psycho-social impact on patient’s quality of life. With a prevalence rate of around 1% worldwide, several factors have been found to be INDIGENOMES RESOURCE OF POPULATION GENOMES FROM INDIA About. The IndiGenomes resource encompasses the genomic data from over 1000 whole genome sequences sequenced from across India as part of the IndiGen programme and represents diverse geographies and ethnicities. The resource provides access to over 55 million genetic variants comprising of single nucleotide variants and indels.T2DIACOD
T2DiACoD is a comprehensive web based platform which provides curated and integrated information about the genes involved in development and progression of Type 2 Diabetes Mellitus.ALMENA - IGIB
almena is a comprehensive resource of genetic variants in Middle East and North Africa. The present version of the database provides information on over 26 million variants derived from integration of multiple whole genome and whole exome studies from the region. CLINGEN DATA AND RESOURCES FOR CLINICAL GENOMICS / CSIR About almena. almena is a comprehensive resource of genetic variants in Middle East and North Africa. The present version of the database provides information on over 26 million variants derived from integration of multiple whole genome and whole exome studies from theregion.
HGVTB|DATABASE FOR HUMAN GENES AND GENETIC VARIANTS The database currently house 98 genes associated with various forms of tuberculosis with 307 variants supported with pertinent patient data, obtained after an exhaustive literature study. 101 of these variations have been found to be exonic and 78 in intronic region. In addition, the database concludes the pathogenicity of the geneticINSACOG DASHBOARD
VoC/VoI Proportions. State Contributions for All Genomes LNCRNOME | LONG NONCODING RNA KNOWLEDGEBASE 22113677-22121096. Strand: +. Length: 928. Description: During cancer it represses the tumor supressor gene p15 by interacting with SUZ12, a subunit of polycomb repressor complex 2. the complex acts as a co-repressor for the expression of p15. Similarly interacts with CBX7 and silences p14/p16 locus by trimethylation. Disease Association: LNCRNOME | LONG NONCODING RNA KNOWLEDGEBASE A Comprehensive database on long non-coding RNA(lncRNA)INDICOV - IGIB
IndiCoV is a comprehensive resource for SARS-CoV genomes and variants from India. The resource provides a searchable interface for genomes, genomic variants and variant annotations for the SARS-CoV-2 isolates from India. The variant positions are based on the SARS-nCoV-2 reference genome (Wuhan-Hu-1 reference genome ; Genbank NC_045512) COVID-19 GENOMIC SURVEILLANCE Pangolin Lineage. Copyright©2021 CSIR-Institute of Genomics and Integrative Biology | VS Lab CSIR-Institute of Genomics and Integrative Biology | VS Lab CIRCAD | CIRCRNAS ASSOCIATED WITH DISEASES Cite this resource: Mercy Rophina, Disha Sharma, Mukta Poojary and Vinod Scaria.(2020) circad: a manually curated database of circular RNAs associated with diseases.Database Accepted (2020)ZFLNCRNAPEDIA
zflncRNApedia is a manually curated and comprehensive resource for long noncoding RNAs in zebrafish (Danio rerio). Apart from the genomic co-ordinates of the lncRNAs, the zflncRNApedia resource also provides information on expression levels across 15 distinct data-sets encompassing developmental stages and adult tissues, derived from Pauli et. al. (2012), Ulitsky et. al. (2011), and Kaushik et CLINGEN DATA AND RESOURCES FOR CLINICAL GENOMICS / CSIR About almena. almena is a comprehensive resource of genetic variants in Middle East and North Africa. The present version of the database provides information on over 26 million variants derived from integration of multiple whole genome and whole exome studies from theregion.
FUNGALRV: ADHESIN PREDICTION AND IMMUNOINFORMATICS PORTAL FungalRV provides an adhesin predictor software tool to predict human pathogenic fungal adhesins and adhesin-like proteins. FungalRV also provides a detailed analysis of predicted adhesins and adhesin-like proteins from eight human pathogenic fungal species namely Candida albicans, Candida glabrata, Aspergillus fumigatus, Coccidioidesimmitis
LNCRNOME | LONG NONCODING RNA KNOWLEDGEBASE About lncRNome lncRNome is a comprehensive searchable biologically oriented knowledgebase for long noncoding RNAs in Humans. The resource hosts information on over 17000 long noncoding RNAs inT2DIACOD
T2DiACoD is a comprehensive web based platform which provides curated and integrated information about the genes involved in development and progression of Type 2 Diabetes Mellitus. HGVTB|DATABASE FOR HUMAN GENES AND GENETIC VARIANTS HGVID rsID Gene P-Value Odds Ratio Geographic Location Pathogenicity Pubmed ID; HGV1: rs3730358: AKT1: 0.043 _ China: Non-Pathogenic: X. Wang, Z. Cao, et. al LNCRNOME | LONG NONCODING RNA KNOWLEDGEBASE Epigenetic Marks: Genomic Loci: Methylation Position in PBMC Cell line: 47644534: H3K4 Histone Methylation Position in Brain Frontal Cortex: 47645172: H3K4 Histone Methylation Position inINDICOV - IGIB
IndiCoV is a comprehensive resource for SARS-CoV genomes and variants from India. The resource provides a searchable interface for genomes, genomic variants and variant annotations for the SARS-CoV-2 isolates from India. The variant positions are based on the SARS-nCoV-2 reference genome (Wuhan-Hu-1 reference genome ; Genbank NC_045512) COVID-19 GENOMIC SURVEILLANCE Pangolin Lineage. Copyright©2021 CSIR-Institute of Genomics and Integrative Biology | VS Lab CSIR-Institute of Genomics and Integrative Biology | VS Lab CIRCAD | CIRCRNAS ASSOCIATED WITH DISEASES Cite this resource: Mercy Rophina, Disha Sharma, Mukta Poojary and Vinod Scaria.(2020) circad: a manually curated database of circular RNAs associated with diseases.Database Accepted (2020)ZFLNCRNAPEDIA
zflncRNApedia is a manually curated and comprehensive resource for long noncoding RNAs in zebrafish (Danio rerio). Apart from the genomic co-ordinates of the lncRNAs, the zflncRNApedia resource also provides information on expression levels across 15 distinct data-sets encompassing developmental stages and adult tissues, derived from Pauli et. al. (2012), Ulitsky et. al. (2011), and Kaushik et CLINGEN DATA AND RESOURCES FOR CLINICAL GENOMICS / CSIR About almena. almena is a comprehensive resource of genetic variants in Middle East and North Africa. The present version of the database provides information on over 26 million variants derived from integration of multiple whole genome and whole exome studies from theregion.
FUNGALRV: ADHESIN PREDICTION AND IMMUNOINFORMATICS PORTAL FungalRV provides an adhesin predictor software tool to predict human pathogenic fungal adhesins and adhesin-like proteins. FungalRV also provides a detailed analysis of predicted adhesins and adhesin-like proteins from eight human pathogenic fungal species namely Candida albicans, Candida glabrata, Aspergillus fumigatus, Coccidioidesimmitis
LNCRNOME | LONG NONCODING RNA KNOWLEDGEBASE About lncRNome lncRNome is a comprehensive searchable biologically oriented knowledgebase for long noncoding RNAs in Humans. The resource hosts information on over 17000 long noncoding RNAs inT2DIACOD
T2DiACoD is a comprehensive web based platform which provides curated and integrated information about the genes involved in development and progression of Type 2 Diabetes Mellitus. HGVTB|DATABASE FOR HUMAN GENES AND GENETIC VARIANTS HGVID rsID Gene P-Value Odds Ratio Geographic Location Pathogenicity Pubmed ID; HGV1: rs3730358: AKT1: 0.043 _ China: Non-Pathogenic: X. Wang, Z. Cao, et. al LNCRNOME | LONG NONCODING RNA KNOWLEDGEBASE Epigenetic Marks: Genomic Loci: Methylation Position in PBMC Cell line: 47644534: H3K4 Histone Methylation Position in Brain Frontal Cortex: 47645172: H3K4 Histone Methylation Position in COVID-19 GENOMIC SURVEILLANCE Pangolin Lineage. Copyright©2021 CSIR-Institute of Genomics and Integrative Biology | VS Lab CSIR-Institute of Genomics and Integrative Biology | VS Lab CLINGEN DATA AND RESOURCES FOR CLINICAL GENOMICS / CSIR About almena. almena is a comprehensive resource of genetic variants in Middle East and North Africa. The present version of the database provides information on over 26 million variants derived from integration of multiple whole genome and whole exome studies from theregion.
ALMENA - IGIB
almena is a comprehensive resource of genetic variants in Middle East and North Africa. The present version of the database provides information on over 26 million variants derived from integration of multiple whole genome and whole exome studies from the region.BRECAN-DB
BreCAN-DB is DataBase of Breakpoint profiles of CANcer genomes, a repository of personalized Cancer somatic DNA breakpoint profiles mapped using whole genome sequencing data mostly obtained from The Cancer Genome Atlas.It also provides a framework to visualize these breakpoints using a Breakpoints browser, also accessible through navigation bar.In the current release of BreCAN-DB v1.0,ABCB1 HOMEPAGE
ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, White). This protein is a member of the MDR/TAP subfamily. Members of the MDR/TAP subfamily are involved in multidrug resistance. The protein encoded by this gene is an ATP-dependent drug efflux pump for xenobiotic compounds with broad substrateINSACOG DASHBOARD
VoC/VoI Proportions. State Contributions for All GenomesMITOEPIGENOME
mitoepigenome. Epigenetic modifications in the mitochondrial genome has been an emerging area of interest in the recent years in field of mitochondrial biology. The renewed interest in the area has been largely fuelled by a number of reports in the recent years suggesting the presence of epigenetic modifications in human mitochondrial genome LNCRNOME | LONG NONCODING RNA KNOWLEDGEBASE Gene Name: CDKN2B-AS1: Gene Type: processed transcript: Gene Status: KNOWN: External Transcript ID: ENST00000422420.1: Transcript Name: CDKN2B-AS1-001: Transcript Type:MIT-O-MATIC
Online version Home page of mit-o-matic provides a brief introduction about the tool, the query form and the download links. Command-line version of mit-o-matic is available for download on the home page, to parse the pileup file and filter out variations based on heteroplasmic frequencies. The user can either upload the fastq file (maximum coverage = 500x) or the parsed pileup file to submit IGVDB HG19: 390 KBP FROM CHR22:39,867,237..40,257,237 For other questions, send mail to ddash@igib.res.in.:Acknowledgements: :
INDICOV - IGIB
IndiCoV is a comprehensive resource for SARS-CoV genomes and variants from India. The resource provides a searchable interface for genomes, genomic variants and variant annotations for the SARS-CoV-2 isolates from India. The variant positions are based on the SARS-nCoV-2 reference genome (Wuhan-Hu-1 reference genome ; Genbank NC_045512) COVID-19 GENOMIC SURVEILLANCE Pangolin Lineage. Copyright©2021 CSIR-Institute of Genomics and Integrative Biology | VS Lab CSIR-Institute of Genomics and Integrative Biology | VS Lab CIRCAD | CIRCRNAS ASSOCIATED WITH DISEASES Cite this resource: Mercy Rophina, Disha Sharma, Mukta Poojary and Vinod Scaria.(2020) circad: a manually curated database of circular RNAs associated with diseases.Database Accepted (2020)ZFLNCRNAPEDIA
zflncRNApedia is a manually curated and comprehensive resource for long noncoding RNAs in zebrafish (Danio rerio). Apart from the genomic co-ordinates of the lncRNAs, the zflncRNApedia resource also provides information on expression levels across 15 distinct data-sets encompassing developmental stages and adult tissues, derived from Pauli et. al. (2012), Ulitsky et. al. (2011), and Kaushik et CLINGEN DATA AND RESOURCES FOR CLINICAL GENOMICS / CSIR About almena. almena is a comprehensive resource of genetic variants in Middle East and North Africa. The present version of the database provides information on over 26 million variants derived from integration of multiple whole genome and whole exome studies from theregion.
FUNGALRV: ADHESIN PREDICTION AND IMMUNOINFORMATICS PORTAL FungalRV provides an adhesin predictor software tool to predict human pathogenic fungal adhesins and adhesin-like proteins. FungalRV also provides a detailed analysis of predicted adhesins and adhesin-like proteins from eight human pathogenic fungal species namely Candida albicans, Candida glabrata, Aspergillus fumigatus, Coccidioidesimmitis
T2DIACOD
T2DiACoD is a comprehensive web based platform which provides curated and integrated information about the genes involved in development and progression of Type 2 Diabetes Mellitus. LNCRNOME | LONG NONCODING RNA KNOWLEDGEBASE About lncRNome lncRNome is a comprehensive searchable biologically oriented knowledgebase for long noncoding RNAs in Humans. The resource hosts information on over 17000 long noncoding RNAs in HGVTB|DATABASE FOR HUMAN GENES AND GENETIC VARIANTS HGVID rsID Gene P-Value Odds Ratio Geographic Location Pathogenicity Pubmed ID; HGV1: rs3730358: AKT1: 0.043 _ China: Non-Pathogenic: X. Wang, Z. Cao, et. al LNCRNOME | LONG NONCODING RNA KNOWLEDGEBASE Epigenetic Marks: Genomic Loci: Methylation Position in PBMC Cell line: 47644534: H3K4 Histone Methylation Position in Brain Frontal Cortex: 47645172: H3K4 Histone Methylation Position inINDICOV - IGIB
IndiCoV is a comprehensive resource for SARS-CoV genomes and variants from India. The resource provides a searchable interface for genomes, genomic variants and variant annotations for the SARS-CoV-2 isolates from India. The variant positions are based on the SARS-nCoV-2 reference genome (Wuhan-Hu-1 reference genome ; Genbank NC_045512) COVID-19 GENOMIC SURVEILLANCE Pangolin Lineage. Copyright©2021 CSIR-Institute of Genomics and Integrative Biology | VS Lab CSIR-Institute of Genomics and Integrative Biology | VS Lab CIRCAD | CIRCRNAS ASSOCIATED WITH DISEASES Cite this resource: Mercy Rophina, Disha Sharma, Mukta Poojary and Vinod Scaria.(2020) circad: a manually curated database of circular RNAs associated with diseases.Database Accepted (2020)ZFLNCRNAPEDIA
zflncRNApedia is a manually curated and comprehensive resource for long noncoding RNAs in zebrafish (Danio rerio). Apart from the genomic co-ordinates of the lncRNAs, the zflncRNApedia resource also provides information on expression levels across 15 distinct data-sets encompassing developmental stages and adult tissues, derived from Pauli et. al. (2012), Ulitsky et. al. (2011), and Kaushik et CLINGEN DATA AND RESOURCES FOR CLINICAL GENOMICS / CSIR About almena. almena is a comprehensive resource of genetic variants in Middle East and North Africa. The present version of the database provides information on over 26 million variants derived from integration of multiple whole genome and whole exome studies from theregion.
FUNGALRV: ADHESIN PREDICTION AND IMMUNOINFORMATICS PORTAL FungalRV provides an adhesin predictor software tool to predict human pathogenic fungal adhesins and adhesin-like proteins. FungalRV also provides a detailed analysis of predicted adhesins and adhesin-like proteins from eight human pathogenic fungal species namely Candida albicans, Candida glabrata, Aspergillus fumigatus, Coccidioidesimmitis
LNCRNOME | LONG NONCODING RNA KNOWLEDGEBASE About lncRNome lncRNome is a comprehensive searchable biologically oriented knowledgebase for long noncoding RNAs in Humans. The resource hosts information on over 17000 long noncoding RNAs inT2DIACOD
T2DiACoD is a comprehensive web based platform which provides curated and integrated information about the genes involved in development and progression of Type 2 Diabetes Mellitus. HGVTB|DATABASE FOR HUMAN GENES AND GENETIC VARIANTS HGVID rsID Gene P-Value Odds Ratio Geographic Location Pathogenicity Pubmed ID; HGV1: rs3730358: AKT1: 0.043 _ China: Non-Pathogenic: X. Wang, Z. Cao, et. al LNCRNOME | LONG NONCODING RNA KNOWLEDGEBASE Epigenetic Marks: Genomic Loci: Methylation Position in PBMC Cell line: 47644534: H3K4 Histone Methylation Position in Brain Frontal Cortex: 47645172: H3K4 Histone Methylation Position in COVID-19 GENOMIC SURVEILLANCE Pangolin Lineage. Copyright©2021 CSIR-Institute of Genomics and Integrative Biology | VS Lab CSIR-Institute of Genomics and Integrative Biology | VS Lab CLINGEN DATA AND RESOURCES FOR CLINICAL GENOMICS / CSIR About almena. almena is a comprehensive resource of genetic variants in Middle East and North Africa. The present version of the database provides information on over 26 million variants derived from integration of multiple whole genome and whole exome studies from theregion.
ALMENA - IGIB
almena is a comprehensive resource of genetic variants in Middle East and North Africa. The present version of the database provides information on over 26 million variants derived from integration of multiple whole genome and whole exome studies from the region.BRECAN-DB
BreCAN-DB is DataBase of Breakpoint profiles of CANcer genomes, a repository of personalized Cancer somatic DNA breakpoint profiles mapped using whole genome sequencing data mostly obtained from The Cancer Genome Atlas.It also provides a framework to visualize these breakpoints using a Breakpoints browser, also accessible through navigation bar.In the current release of BreCAN-DB v1.0,ABCB1 HOMEPAGE
ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, White). This protein is a member of the MDR/TAP subfamily. Members of the MDR/TAP subfamily are involved in multidrug resistance. The protein encoded by this gene is an ATP-dependent drug efflux pump for xenobiotic compounds with broad substrateINSACOG DASHBOARD
VoC/VoI Proportions. State Contributions for All GenomesMITOEPIGENOME
mitoepigenome. Epigenetic modifications in the mitochondrial genome has been an emerging area of interest in the recent years in field of mitochondrial biology. The renewed interest in the area has been largely fuelled by a number of reports in the recent years suggesting the presence of epigenetic modifications in human mitochondrial genome LNCRNOME | LONG NONCODING RNA KNOWLEDGEBASE Gene Name: CDKN2B-AS1: Gene Type: processed transcript: Gene Status: KNOWN: External Transcript ID: ENST00000422420.1: Transcript Name: CDKN2B-AS1-001: Transcript Type:MIT-O-MATIC
Online version Home page of mit-o-matic provides a brief introduction about the tool, the query form and the download links. Command-line version of mit-o-matic is available for download on the home page, to parse the pileup file and filter out variations based on heteroplasmic frequencies. The user can either upload the fastq file (maximum coverage = 500x) or the parsed pileup file to submit IGVDB HG19: 390 KBP FROM CHR22:39,867,237..40,257,237 For other questions, send mail to ddash@igib.res.in.:Acknowledgements: :
INDICOV - IGIB
IndiCoV is a comprehensive resource for SARS-CoV genomes and variants from India. The resource provides a searchable interface for genomes, genomic variants and variant annotations for the SARS-CoV-2 isolates from India. The variant positions are based on the SARS-nCoV-2 reference genome (Wuhan-Hu-1 reference genome ; Genbank NC_045512) COVID-19 GENOMIC SURVEILLANCE Pangolin Lineage. Copyright©2021 CSIR-Institute of Genomics and Integrative Biology | VS Lab CSIR-Institute of Genomics and Integrative Biology | VS Lab CIRCAD | CIRCRNAS ASSOCIATED WITH DISEASESCIRCAD PCB Cite this resource: Mercy Rophina, Disha Sharma, Mukta Poojary and Vinod Scaria.(2020) circad: a manually curated database of circular RNAs associated with diseases.Database Accepted (2020)ZFLNCRNAPEDIA
zflncRNApedia is a manually curated and comprehensive resource for long noncoding RNAs in zebrafish (Danio rerio). Apart from the genomic co-ordinates of the lncRNAs, the zflncRNApedia resource also provides information on expression levels across 15 distinct data-sets encompassing developmental stages and adult tissues, derived from Pauli et. al. (2012), Ulitsky et. al. (2011), and Kaushik et CLINGEN DATA AND RESOURCES FOR CLINICAL GENOMICS / CSIR About almena. almena is a comprehensive resource of genetic variants in Middle East and North Africa. The present version of the database provides information on over 26 million variants derived from integration of multiple whole genome and whole exome studies from theregion.
FUNGALRV: ADHESIN PREDICTION AND IMMUNOINFORMATICS PORTAL FungalRV provides an adhesin predictor software tool to predict human pathogenic fungal adhesins and adhesin-like proteins. FungalRV also provides a detailed analysis of predicted adhesins and adhesin-like proteins from eight human pathogenic fungal species namely Candida albicans, Candida glabrata, Aspergillus fumigatus, Coccidioidesimmitis
T2DIACOD
T2DiACoD is a comprehensive web based platform which provides curated and integrated information about the genes involved in development and progression of Type 2 Diabetes Mellitus. LNCRNOME | LONG NONCODING RNA KNOWLEDGEBASE About lncRNome lncRNome is a comprehensive searchable biologically oriented knowledgebase for long noncoding RNAs in Humans. The resource hosts information on over 17000 long noncoding RNAs in HGVTB|DATABASE FOR HUMAN GENES AND GENETIC VARIANTS HGVID rsID Gene P-Value Odds Ratio Geographic Location Pathogenicity Pubmed ID; HGV1: rs3730358: AKT1: 0.043 _ China: Non-Pathogenic: X. Wang, Z. Cao, et. al LNCRNOME | LONG NONCODING RNA KNOWLEDGEBASE Epigenetic Marks: Genomic Loci: Methylation Position in PBMC Cell line: 47644534: H3K4 Histone Methylation Position in Brain Frontal Cortex: 47645172: H3K4 Histone Methylation Position inINDICOV - IGIB
IndiCoV is a comprehensive resource for SARS-CoV genomes and variants from India. The resource provides a searchable interface for genomes, genomic variants and variant annotations for the SARS-CoV-2 isolates from India. The variant positions are based on the SARS-nCoV-2 reference genome (Wuhan-Hu-1 reference genome ; Genbank NC_045512) COVID-19 GENOMIC SURVEILLANCE Pangolin Lineage. Copyright©2021 CSIR-Institute of Genomics and Integrative Biology | VS Lab CSIR-Institute of Genomics and Integrative Biology | VS Lab CIRCAD | CIRCRNAS ASSOCIATED WITH DISEASESCIRCAD PCB Cite this resource: Mercy Rophina, Disha Sharma, Mukta Poojary and Vinod Scaria.(2020) circad: a manually curated database of circular RNAs associated with diseases.Database Accepted (2020)ZFLNCRNAPEDIA
zflncRNApedia is a manually curated and comprehensive resource for long noncoding RNAs in zebrafish (Danio rerio). Apart from the genomic co-ordinates of the lncRNAs, the zflncRNApedia resource also provides information on expression levels across 15 distinct data-sets encompassing developmental stages and adult tissues, derived from Pauli et. al. (2012), Ulitsky et. al. (2011), and Kaushik et CLINGEN DATA AND RESOURCES FOR CLINICAL GENOMICS / CSIR About almena. almena is a comprehensive resource of genetic variants in Middle East and North Africa. The present version of the database provides information on over 26 million variants derived from integration of multiple whole genome and whole exome studies from theregion.
FUNGALRV: ADHESIN PREDICTION AND IMMUNOINFORMATICS PORTAL FungalRV provides an adhesin predictor software tool to predict human pathogenic fungal adhesins and adhesin-like proteins. FungalRV also provides a detailed analysis of predicted adhesins and adhesin-like proteins from eight human pathogenic fungal species namely Candida albicans, Candida glabrata, Aspergillus fumigatus, Coccidioidesimmitis
T2DIACOD
T2DiACoD is a comprehensive web based platform which provides curated and integrated information about the genes involved in development and progression of Type 2 Diabetes Mellitus. LNCRNOME | LONG NONCODING RNA KNOWLEDGEBASE About lncRNome lncRNome is a comprehensive searchable biologically oriented knowledgebase for long noncoding RNAs in Humans. The resource hosts information on over 17000 long noncoding RNAs in HGVTB|DATABASE FOR HUMAN GENES AND GENETIC VARIANTS HGVID rsID Gene P-Value Odds Ratio Geographic Location Pathogenicity Pubmed ID; HGV1: rs3730358: AKT1: 0.043 _ China: Non-Pathogenic: X. Wang, Z. Cao, et. al LNCRNOME | LONG NONCODING RNA KNOWLEDGEBASE Epigenetic Marks: Genomic Loci: Methylation Position in PBMC Cell line: 47644534: H3K4 Histone Methylation Position in Brain Frontal Cortex: 47645172: H3K4 Histone Methylation Position in COVID-19 GENOMIC SURVEILLANCE Pangolin Lineage. Copyright©2021 CSIR-Institute of Genomics and Integrative Biology | VS Lab CSIR-Institute of Genomics and Integrative Biology | VS Lab CLINGEN DATA AND RESOURCES FOR CLINICAL GENOMICS / CSIR About almena. almena is a comprehensive resource of genetic variants in Middle East and North Africa. The present version of the database provides information on over 26 million variants derived from integration of multiple whole genome and whole exome studies from theregion.
ALMENA - IGIB
almena is a comprehensive resource of genetic variants in Middle East and North Africa. The present version of the database provides information on over 26 million variants derived from integration of multiple whole genome and whole exome studies from the region.BRECAN-DB
BreCAN-DB is DataBase of Breakpoint profiles of CANcer genomes, a repository of personalized Cancer somatic DNA breakpoint profiles mapped using whole genome sequencing data mostly obtained from The Cancer Genome Atlas.It also provides a framework to visualize these breakpoints using a Breakpoints browser, also accessible through navigation bar.In the current release of BreCAN-DB v1.0,ABCB1 HOMEPAGE
ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, White). This protein is a member of the MDR/TAP subfamily. Members of the MDR/TAP subfamily are involved in multidrug resistance. The protein encoded by this gene is an ATP-dependent drug efflux pump for xenobiotic compounds with broad substrateINSACOG DASHBOARD
VoC/VoI Proportions. State Contributions for All GenomesMITOEPIGENOME
mitoepigenome. Epigenetic modifications in the mitochondrial genome has been an emerging area of interest in the recent years in field of mitochondrial biology. The renewed interest in the area has been largely fuelled by a number of reports in the recent years suggesting the presence of epigenetic modifications in human mitochondrial genome LNCRNOME | LONG NONCODING RNA KNOWLEDGEBASE Gene Name: CDKN2B-AS1: Gene Type: processed transcript: Gene Status: KNOWN: External Transcript ID: ENST00000422420.1: Transcript Name: CDKN2B-AS1-001: Transcript Type:MIT-O-MATIC
Online version Home page of mit-o-matic provides a brief introduction about the tool, the query form and the download links. Command-line version of mit-o-matic is available for download on the home page, to parse the pileup file and filter out variations based on heteroplasmic frequencies. The user can either upload the fastq file (maximum coverage = 500x) or the parsed pileup file to submit IGVDB HG19: 390 KBP FROM CHR22:39,867,237..40,257,237 For other questions, send mail to ddash@igib.res.in.:Acknowledgements: :
* English
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