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SHOWCASE – CLARAFI A narrated animation depicting the events that lead to Dengue virus entry into a host cell. In particular, rearrangements and conformational changes in the Dengue glycoprotein E are shown. These lead to membrane fusion and subsequent release of the viral payload into the host cell cytoplasm. Created forCREATE AN ACCOUNT
Account Details. Username (required) Email Address (required) Choose a Password (required) Confirm Password (required)MMAYA – CLARAFI
mMaya – Clarafi. Molecular Maya (mMaya) is a free plugin for Autodesk Maya that lets users import, model and animate molecular structures. We leverage the power and flexibility of Maya while offering innovative, intuitive tools specialized for the challenges of molecular modeling and animation. mMaya is further enhanced by aseries of 'kits
INTRODUCTION TO MOLECULAR MAYA DSDNA KIT Molecular Maya’s (mMaya) double-stranded DNA (dsDNA) kit automates the modeling, animation and visualization of structurally-accurate dsDNA. This course serves as an introduction to the kit and all its basic functionalities. We’ll begin with de novo modeling of dsDNA starting from a base-pair count, a DNA sequence or a custom- and/orPDB
CREATING WEB-BASED INTERACTIVE MOLECULAR VISUALIZATIONS Creating Web-Based Interactive Molecular Visualizations – Clarafi. 3D animation software empowers scientific illustrators and animators to create stunning visualizations of the molecular world. While animations can be an efficient and eye-catching way of communicating scientific findings, they do not let the audience interact and explorethe
CONTROLLING & SIMULATING 3D FLUIDS: MAYA FLUIDS & BIFROST In this tutorial, Controlling & Simulating 3D Fluids: Maya Fluids and Bifrost, we will introduce you to Maya’s two main fluid simulation techniques. Maya’s Fluid Effects beautifully simulates gaseous effects. We will demonstrate this tool by creating a venom ejectionsimulation.
INTRODUCTION TO MOLECULAR MAYA MODELING KIT Molecular Maya’s (mMaya) Modeling kit facilitates many of the challenges in the modeling of high-quality full-length protein models. Incomplete structural data often require us to create structural fragments based on primary sequence and then pose and connect these peptide fragments to existing structures. BRINGING CORALS TO LIFE: BUILDING DYNAMIC RIGS FOR Building custom rigs demands a deep understanding of the Maya rigging and animation toolkit. This tutorial takes you through my process for creating a rig to animate a coral polyp that blends direct keyframe control with organic Maya Nucleus dynamic motion. The chapters in this tutorial go step by step through the process from building the BARTH VAN ROSSUM, PH.D. Barth van Rossum, Ph.D. Academic / Scientific Animator Career Profile. Please introduce yourself (what is your current training/educational status and/or where do you work?) and share with us how you decided to get into scientific visualization. CLARAFI – SCIENCE VISUALIZATION MADE CLEARTOOLSSHOWCASECOURSESCAREERSRESOURCESJOIN Clarafi is a community of scientists, graphics professionals, students and educators interested in scientific visualization. We aim to transform our understanding and teaching of science through our community resources and facilitate the creation of accurate visualizations through intuitive software tools and high qualityinstruction.
SHOWCASE – CLARAFI A narrated animation depicting the events that lead to Dengue virus entry into a host cell. In particular, rearrangements and conformational changes in the Dengue glycoprotein E are shown. These lead to membrane fusion and subsequent release of the viral payload into the host cell cytoplasm. Created forCREATE AN ACCOUNT
Account Details. Username (required) Email Address (required) Choose a Password (required) Confirm Password (required)MMAYA – CLARAFI
mMaya – Clarafi. Molecular Maya (mMaya) is a free plugin for Autodesk Maya that lets users import, model and animate molecular structures. We leverage the power and flexibility of Maya while offering innovative, intuitive tools specialized for the challenges of molecular modeling and animation. mMaya is further enhanced by aseries of 'kits
INTRODUCTION TO MOLECULAR MAYA DSDNA KIT Molecular Maya’s (mMaya) double-stranded DNA (dsDNA) kit automates the modeling, animation and visualization of structurally-accurate dsDNA. This course serves as an introduction to the kit and all its basic functionalities. We’ll begin with de novo modeling of dsDNA starting from a base-pair count, a DNA sequence or a custom- and/orPDB
CREATING WEB-BASED INTERACTIVE MOLECULAR VISUALIZATIONS Creating Web-Based Interactive Molecular Visualizations – Clarafi. 3D animation software empowers scientific illustrators and animators to create stunning visualizations of the molecular world. While animations can be an efficient and eye-catching way of communicating scientific findings, they do not let the audience interact and explorethe
CONTROLLING & SIMULATING 3D FLUIDS: MAYA FLUIDS & BIFROST In this tutorial, Controlling & Simulating 3D Fluids: Maya Fluids and Bifrost, we will introduce you to Maya’s two main fluid simulation techniques. Maya’s Fluid Effects beautifully simulates gaseous effects. We will demonstrate this tool by creating a venom ejectionsimulation.
INTRODUCTION TO MOLECULAR MAYA MODELING KIT Molecular Maya’s (mMaya) Modeling kit facilitates many of the challenges in the modeling of high-quality full-length protein models. Incomplete structural data often require us to create structural fragments based on primary sequence and then pose and connect these peptide fragments to existing structures. BRINGING CORALS TO LIFE: BUILDING DYNAMIC RIGS FOR Building custom rigs demands a deep understanding of the Maya rigging and animation toolkit. This tutorial takes you through my process for creating a rig to animate a coral polyp that blends direct keyframe control with organic Maya Nucleus dynamic motion. The chapters in this tutorial go step by step through the process from building the BARTH VAN ROSSUM, PH.D. Barth van Rossum, Ph.D. Academic / Scientific Animator Career Profile. Please introduce yourself (what is your current training/educational status and/or where do you work?) and share with us how you decided to get into scientific visualization.TOOLS – CLARAFI
featured tools. Clarafi is the home of Molecular Maya (mMaya), a free Maya plugin that lets users import, model and animate molecular structures. mMaya is enhanced by a series of kits that expand its functionality and greatly streamline molecular animation. The following is a partial list of software suites commonly used inCAREERS – CLARAFI
Scientific visualization is a field in full expansion with a range of possible career paths and opportunities. This section lists prominent training programs, compiles career-oriented articles on scientific visualization and offers a growing collection of interviews and profiles created for Clarafi. INTRODUCTION TO MOLECULAR MAYA DSDNA KIT Molecular Maya’s (mMaya) double-stranded DNA (dsDNA) kit automates the modeling, animation and visualization of structurally-accurate dsDNA. This course serves as an introduction to the kit and all its basic functionalities. We’ll begin with de novo modeling of dsDNA starting from a base-pair count, a DNA sequence or a custom- and/orPDB
ILLUSTRATOR FOR SCIENTIFIC VISUALIZATION I Illustrator for Scientific Visualization I. This tutorial demonstrates beginner-level tools in Adobe Illustrator that support data visualization. We’ll walk through the creation of a poster and the placement of customized data plots, charts, and graphics. The tutorial is parsed so that each chapter tackles a specific tool or function,making
MODO FOR SCIENTIFIC VISUALIZATION: HARDSURFACE MODELING MODO for Scientific Visualization: Hardsurface Modeling – Clarafi. This tutorial introduces The Foundry’s MODO as a tool for hard-surface modeling. We assume some basic knowledge of 3D modeling, but no. experience with MODO. This tutorial provides a broad overview of MODO’s. modeling interface, then uses a few fundamental tools tobox
CHARLES REILLY, PHD
This involves navigating publications and existing data sets to build up an empirical understanding of the biological system I am designing. Data is very context dependent and you cant always trust what it “looks” like. Therefore, having an understanding of what the data represents and what context it is based in, guides the design approachLAUREN ALEZA KAYE
My foundation in science comes from a bachelor’s degree in Chemistry at Harvard. My animation knowledge is mostly self-taught, which means an extraordinary amount of Googling, reading documentation, and a daily practice studying the visual arts. To jump start my studies, I took classes at Gnomon School for VFX in Los Angeles, and I audited aMAJA DIVJAK, PH.D.
I currently work solo as resident Science Animator at The Gene Technology Access Centre in Melbourne, Australia. I have a PhD in molecular biology from Monash University in Melbourne and a Graduate Certificate in 3D Animation from the Australian Film Television and Radio School in Sydney, Australia. After my PhD, I went intoScientific Sales
JAMES PERKINS, MS, MFA, CMI James Perkins, MA, MS, CMI Medical Illustrator, Academic Career Profile. Please introduce yourself (what is your current training/educational status and/or where do you work?) and share with us how you decided to get into scientific visualization. KATE PATTERSON, PH.D. Kate Patterson, PhD Biomedical Animator CAREER PROFILE. Please introduce yourself (what is your current training/educational status and/or where do you work?) and share with us how you decided to get into scientific visualization. CLARAFI – SCIENCE VISUALIZATION MADE CLEARTOOLSSHOWCASECOURSESCAREERSRESOURCESJOIN Clarafi is a community of scientists, graphics professionals, students and educators interested in scientific visualization. We aim to transform our understanding and teaching of science through our community resources and facilitate the creation of accurate visualizations through intuitive software tools and high qualityinstruction.
TOOLS – CLARAFI
featured tools. Clarafi is the home of Molecular Maya (mMaya), a free Maya plugin that lets users import, model and animate molecular structures. mMaya is enhanced by a series of kits that expand its functionality and greatly streamline molecular animation. The following is a partial list of software suites commonly used in SHOWCASE – CLARAFI A narrated animation depicting the events that lead to Dengue virus entry into a host cell. In particular, rearrangements and conformational changes in the Dengue glycoprotein E are shown. These lead to membrane fusion and subsequent release of the viral payload into the host cell cytoplasm. Created forMMAYA – CLARAFI
mMaya – Clarafi. Molecular Maya (mMaya) is a free plugin for Autodesk Maya that lets users import, model and animate molecular structures. We leverage the power and flexibility of Maya while offering innovative, intuitive tools specialized for the challenges of molecular modeling and animation. mMaya is further enhanced by aseries of 'kits
CREATE AN ACCOUNT
Account Details. Username (required) Email Address (required) Choose a Password (required) Confirm Password (required) INTRODUCTION TO MOLECULAR MAYA DSDNA KIT Molecular Maya’s (mMaya) double-stranded DNA (dsDNA) kit automates the modeling, animation and visualization of structurally-accurate dsDNA. This course serves as an introduction to the kit and all its basic functionalities. We’ll begin with de novo modeling of dsDNA starting from a base-pair count, a DNA sequence or a custom- and/orPDB
INTRODUCTION TO MOLECULAR MAYA MODELING KIT Molecular Maya’s (mMaya) Modeling kit facilitates many of the challenges in the modeling of high-quality full-length protein models. Incomplete structural data often require us to create structural fragments based on primary sequence and then pose and connect these peptide fragments to existing structures. BRINGING CORALS TO LIFE: BUILDING DYNAMIC RIGS FOR Building custom rigs demands a deep understanding of the Maya rigging and animation toolkit. This tutorial takes you through my process for creating a rig to animate a coral polyp that blends direct keyframe control with organic Maya Nucleus dynamic motion. The chapters in this tutorial go step by step through the process from building the JAMES PERKINS, MS, MFA, CMI It shows the chemotherapy drug docetaxel (Taxotere®) binding to the protein beta-tubulin, part of the alpha-beta tubulin dimer that makes up microtubules. The drug prevents the breakdown of the mitotic spindle, arresting dividing cells in metaphase. Sample 2 – Nicotinic Acetylcholine Receptor. This shows the structure and action of the BARTH VAN ROSSUM, PH.D. Barth van Rossum, Ph.D. Academic / Scientific Animator Career Profile. Please introduce yourself (what is your current training/educational status and/or where do you work?) and share with us how you decided to get into scientific visualization. CLARAFI – SCIENCE VISUALIZATION MADE CLEARTOOLSSHOWCASECOURSESCAREERSRESOURCESJOIN Clarafi is a community of scientists, graphics professionals, students and educators interested in scientific visualization. We aim to transform our understanding and teaching of science through our community resources and facilitate the creation of accurate visualizations through intuitive software tools and high qualityinstruction.
TOOLS – CLARAFI
featured tools. Clarafi is the home of Molecular Maya (mMaya), a free Maya plugin that lets users import, model and animate molecular structures. mMaya is enhanced by a series of kits that expand its functionality and greatly streamline molecular animation. The following is a partial list of software suites commonly used in SHOWCASE – CLARAFI A narrated animation depicting the events that lead to Dengue virus entry into a host cell. In particular, rearrangements and conformational changes in the Dengue glycoprotein E are shown. These lead to membrane fusion and subsequent release of the viral payload into the host cell cytoplasm. Created forMMAYA – CLARAFI
mMaya – Clarafi. Molecular Maya (mMaya) is a free plugin for Autodesk Maya that lets users import, model and animate molecular structures. We leverage the power and flexibility of Maya while offering innovative, intuitive tools specialized for the challenges of molecular modeling and animation. mMaya is further enhanced by aseries of 'kits
CREATE AN ACCOUNT
Account Details. Username (required) Email Address (required) Choose a Password (required) Confirm Password (required) INTRODUCTION TO MOLECULAR MAYA DSDNA KIT Molecular Maya’s (mMaya) double-stranded DNA (dsDNA) kit automates the modeling, animation and visualization of structurally-accurate dsDNA. This course serves as an introduction to the kit and all its basic functionalities. We’ll begin with de novo modeling of dsDNA starting from a base-pair count, a DNA sequence or a custom- and/orPDB
INTRODUCTION TO MOLECULAR MAYA MODELING KIT Molecular Maya’s (mMaya) Modeling kit facilitates many of the challenges in the modeling of high-quality full-length protein models. Incomplete structural data often require us to create structural fragments based on primary sequence and then pose and connect these peptide fragments to existing structures. BRINGING CORALS TO LIFE: BUILDING DYNAMIC RIGS FOR Building custom rigs demands a deep understanding of the Maya rigging and animation toolkit. This tutorial takes you through my process for creating a rig to animate a coral polyp that blends direct keyframe control with organic Maya Nucleus dynamic motion. The chapters in this tutorial go step by step through the process from building the JAMES PERKINS, MS, MFA, CMI It shows the chemotherapy drug docetaxel (Taxotere®) binding to the protein beta-tubulin, part of the alpha-beta tubulin dimer that makes up microtubules. The drug prevents the breakdown of the mitotic spindle, arresting dividing cells in metaphase. Sample 2 – Nicotinic Acetylcholine Receptor. This shows the structure and action of the BARTH VAN ROSSUM, PH.D. Barth van Rossum, Ph.D. Academic / Scientific Animator Career Profile. Please introduce yourself (what is your current training/educational status and/or where do you work?) and share with us how you decided to get into scientific visualization.COURSES – CLARAFI
Realistic Skin Shading, Lighting, and Rendering in 3ds Max and V-Ray, Adam Lewis, Digital-Tutors. Creating Morph Targets for Facial Animation in 3ds Max and ZBrush, Dani Garcia, Digital-Tutors. Creating a Photorealistic Female Character in ZBrush and 3ds Max, Ruben Karamanites, Digital INTRODUCTION TO MOLECULAR MAYA DSDNA KIT Molecular Maya’s (mMaya) double-stranded DNA (dsDNA) kit automates the modeling, animation and visualization of structurally-accurate dsDNA. This course serves as an introduction to the kit and all its basic functionalities. We’ll begin with de novo modeling of dsDNA starting from a base-pair count, a DNA sequence or a custom- and/orPDB
INTRODUCTION TO MOLECULAR MAYA RIGGING KIT Introduction to Molecular Maya Rigging Kit – Clarafi. Molecular Maya’s (mMaya) Rigging kit automates the modeling, rigging, simulation and visualization of macromolecules. A rig is a virtual skeleton that controls the range of dynamic motion of a 3D model. In the case of macromolecules like proteins, this can be an incrediblychallenging task.
CONTROLLING & SIMULATING 3D FLUIDS: MAYA FLUIDS & BIFROST In this tutorial, Controlling & Simulating 3D Fluids: Maya Fluids and Bifrost, we will introduce you to Maya’s two main fluid simulation techniques. Maya’s Fluid Effects beautifully simulates gaseous effects. We will demonstrate this tool by creating a venom ejectionsimulation.
PHOTOSHOP FOR SCIENTIFIC VISUALIZATION Clarafi. This tutorial series explores beginner and intermediate-level Photoshop tools. For our beginner-level Photoshoppers, the chapters take you step-by-step through three mini-projects. We start with basic document creation, and move onwards to more and more advanced tools as STORYBOARDING FOR SCIENTIFIC ANIMATION Clarafi. This tutorial series will get you going with your first storyboard for scientific animation. We will cover the basics including: film and story structure, the function of shot types, the role of the camera, and the dynamics of lighting. Along the way, we will apply these topics to the storyboard. PROTEIN FOLDING & STABILITY Protein Folding & Stability What is a Protein? | Maria Voigt. This animation from the Protein Data Bank guides us through the world of protein, which play countless roles throughout the biological world from catalyzing chemical reactions to building the structures of allliving things.
BOSCO HO, PH.D.
Hi, I’m Bosco Ho, a bioinformatician at Monash University. I did my PhD in biophysics in Sydney and then bounced around several labs around the world. I did a stint in two theoretical biophysics labs as well as several structural biology labs. As I’ve always loved programming, I ended up choosing research topics that had tons ofcomputation
MODELING & RENDERING ORGANIC STRUCTURES IN ZBRUSH This tutorial will inspire you to develop your own illustration process by learning intermediate to advanced ZBrush techniques and Photoshop techniques. Develop an appreciation for coral approaches to modeling branching organic structures. Learn how to render passes fromZBrush
KATE PATTERSON, PH.D. Kate Patterson, PhD Biomedical Animator CAREER PROFILE. Please introduce yourself (what is your current training/educational status and/or where do you work?) and share with us how you decided to get into scientific visualization. CLARAFI – SCIENCE VISUALIZATION MADE CLEARTOOLSSHOWCASECOURSESCAREERSRESOURCESJOIN Clarafi is a community of scientists, graphics professionals, students and educators interested in scientific visualization. We aim to transform our understanding and teaching of science through our community resources and facilitate the creation of accurate visualizations through intuitive software tools and high qualityinstruction.
TOOLS – CLARAFI
featured tools. Clarafi is the home of Molecular Maya (mMaya), a free Maya plugin that lets users import, model and animate molecular structures. mMaya is enhanced by a series of kits that expand its functionality and greatly streamline molecular animation. The following is a partial list of software suites commonly used inCOURSES – CLARAFI
Realistic Skin Shading, Lighting, and Rendering in 3ds Max and V-Ray, Adam Lewis, Digital-Tutors. Creating Morph Targets for Facial Animation in 3ds Max and ZBrush, Dani Garcia, Digital-Tutors. Creating a Photorealistic Female Character in ZBrush and 3ds Max, Ruben Karamanites, Digital SHOWCASE – CLARAFI A narrated animation depicting the events that lead to Dengue virus entry into a host cell. In particular, rearrangements and conformational changes in the Dengue glycoprotein E are shown. These lead to membrane fusion and subsequent release of the viral payload into the host cell cytoplasm. Created forCREATE AN ACCOUNT
Account Details. Username (required) Email Address (required) Choose a Password (required) Confirm Password (required) RESOURCES – CLARAFI Resources – Clarafi. Please join the Clarafi community to view thispage.
MMAYA – CLARAFI
mMaya – Clarafi. Molecular Maya (mMaya) is a free plugin for Autodesk Maya that lets users import, model and animate molecular structures. We leverage the power and flexibility of Maya while offering innovative, intuitive tools specialized for the challenges of molecular modeling and animation. mMaya is further enhanced by aseries of 'kits
INTRODUCTION TO MOLECULAR MAYA DSDNA KIT Molecular Maya’s (mMaya) double-stranded DNA (dsDNA) kit automates the modeling, animation and visualization of structurally-accurate dsDNA. This course serves as an introduction to the kit and all its basic functionalities. We’ll begin with de novo modeling of dsDNA starting from a base-pair count, a DNA sequence or a custom- and/orPDB
BRINGING CORALS TO LIFE: BUILDING DYNAMIC RIGS FOR Building custom rigs demands a deep understanding of the Maya rigging and animation toolkit. This tutorial takes you through my process for creating a rig to animate a coral polyp that blends direct keyframe control with organic Maya Nucleus dynamic motion. The chapters in this tutorial go step by step through the process from building the ETSUKO UNO – CLARAFI The Origin of Breast Cancer | Drew Berry, Etsuko Uno. This animation visualises research published in Nature Medicine (Vol 15, Issue 8, 2009) by the laboratory of Jane Visvader and Geoffrey Lindeman. The mammary gland is comprised of three main cell types; alveolar, ductal and myoepithelial cells. Breast stem cells can develop into any of the CLARAFI – SCIENCE VISUALIZATION MADE CLEARTOOLSSHOWCASECOURSESCAREERSRESOURCESJOIN Clarafi is a community of scientists, graphics professionals, students and educators interested in scientific visualization. We aim to transform our understanding and teaching of science through our community resources and facilitate the creation of accurate visualizations through intuitive software tools and high qualityinstruction.
TOOLS – CLARAFI
featured tools. Clarafi is the home of Molecular Maya (mMaya), a free Maya plugin that lets users import, model and animate molecular structures. mMaya is enhanced by a series of kits that expand its functionality and greatly streamline molecular animation. The following is a partial list of software suites commonly used inCOURSES – CLARAFI
Realistic Skin Shading, Lighting, and Rendering in 3ds Max and V-Ray, Adam Lewis, Digital-Tutors. Creating Morph Targets for Facial Animation in 3ds Max and ZBrush, Dani Garcia, Digital-Tutors. Creating a Photorealistic Female Character in ZBrush and 3ds Max, Ruben Karamanites, Digital SHOWCASE – CLARAFI A narrated animation depicting the events that lead to Dengue virus entry into a host cell. In particular, rearrangements and conformational changes in the Dengue glycoprotein E are shown. These lead to membrane fusion and subsequent release of the viral payload into the host cell cytoplasm. Created forCREATE AN ACCOUNT
Account Details. Username (required) Email Address (required) Choose a Password (required) Confirm Password (required) RESOURCES – CLARAFI Resources – Clarafi. Please join the Clarafi community to view thispage.
MMAYA – CLARAFI
mMaya – Clarafi. Molecular Maya (mMaya) is a free plugin for Autodesk Maya that lets users import, model and animate molecular structures. We leverage the power and flexibility of Maya while offering innovative, intuitive tools specialized for the challenges of molecular modeling and animation. mMaya is further enhanced by aseries of 'kits
INTRODUCTION TO MOLECULAR MAYA DSDNA KIT Molecular Maya’s (mMaya) double-stranded DNA (dsDNA) kit automates the modeling, animation and visualization of structurally-accurate dsDNA. This course serves as an introduction to the kit and all its basic functionalities. We’ll begin with de novo modeling of dsDNA starting from a base-pair count, a DNA sequence or a custom- and/orPDB
BRINGING CORALS TO LIFE: BUILDING DYNAMIC RIGS FOR Building custom rigs demands a deep understanding of the Maya rigging and animation toolkit. This tutorial takes you through my process for creating a rig to animate a coral polyp that blends direct keyframe control with organic Maya Nucleus dynamic motion. The chapters in this tutorial go step by step through the process from building the ETSUKO UNO – CLARAFI The Origin of Breast Cancer | Drew Berry, Etsuko Uno. This animation visualises research published in Nature Medicine (Vol 15, Issue 8, 2009) by the laboratory of Jane Visvader and Geoffrey Lindeman. The mammary gland is comprised of three main cell types; alveolar, ductal and myoepithelial cells. Breast stem cells can develop into any of the RESOURCES – CLARAFI Resources – Clarafi. Please join the Clarafi community to view thispage.
MEMBERSHIP – CLARAFI Start your membership in 2 easy steps. Step 1: LOGIN. If you don't have a username and password, join to setup your account. If you already are a member, log in and proceed to step 2. Step 2: MEMBERSHIP OPTIONS. Choose one of the pricing options below.CAREERS – CLARAFI
Scientific visualization is a field in full expansion with a range of possible career paths and opportunities. This section lists prominent training programs, compiles career-oriented articles on scientific visualization and offers a growing collection of interviews and profiles created for Clarafi. CREATING WEB-BASED INTERACTIVE MOLECULAR VISUALIZATIONS Creating Web-Based Interactive Molecular Visualizations – Clarafi. 3D animation software empowers scientific illustrators and animators to create stunning visualizations of the molecular world. While animations can be an efficient and eye-catching way of communicating scientific findings, they do not let the audience interact and explorethe
PROTEIN FOLDING & STABILITY Protein Folding & Stability What is a Protein? | Maria Voigt. This animation from the Protein Data Bank guides us through the world of protein, which play countless roles throughout the biological world from catalyzing chemical reactions to building the structures of allliving things.
INTRODUCTION TO MOLECULAR MAYA MODELING KIT Molecular Maya’s (mMaya) Modeling kit facilitates many of the challenges in the modeling of high-quality full-length protein models. Incomplete structural data often require us to create structural fragments based on primary sequence and then pose and connect these peptide fragments to existing structures. THE MAKING OF APOPTOSOME A behind-the-scenes look at how we created our 2013 Apoptosome Assembly animation for Cell Signaling Technologies, with step-by-step tutorials that cover key concepts including research and pre-production, construction of complete protein models from available 3D structural data as well as missing data, and compositing techniques used to avoid split-attention issues. INTRODUCTION TO MOLECULAR MAYA RIGGING KIT Introduction to Molecular Maya Rigging Kit – Clarafi. Molecular Maya’s (mMaya) Rigging kit automates the modeling, rigging, simulation and visualization of macromolecules. A rig is a virtual skeleton that controls the range of dynamic motion of a 3D model. In the case of macromolecules like proteins, this can be an incrediblychallenging task.
MODO FOR SCIENTIFIC VISUALIZATION: HARDSURFACE MODELING MODO for Scientific Visualization: Hardsurface Modeling – Clarafi. This tutorial introduces The Foundry’s MODO as a tool for hard-surface modeling. We assume some basic knowledge of 3D modeling, but no. experience with MODO. This tutorial provides a broad overview of MODO’s. modeling interface, then uses a few fundamental tools tobox
JAMES PERKINS, MS, MFA, CMI James Perkins, MA, MS, CMI Medical Illustrator, Academic Career Profile. Please introduce yourself (what is your current training/educational status and/or where do you work?) and share with us how you decided to get into scientific visualization. CLARAFI – SCIENCE VISUALIZATION MADE CLEARTOOLSSHOWCASECOURSESCAREERSRESOURCESJOIN Clarafi is a community of scientists, graphics professionals, students and educators interested in scientific visualization. We aim to transform our understanding and teaching of science through our community resources and facilitate the creation of accurate visualizations through intuitive software tools and high qualityinstruction.
TOOLS – CLARAFI
featured tools. Clarafi is the home of Molecular Maya (mMaya), a free Maya plugin that lets users import, model and animate molecular structures. mMaya is enhanced by a series of kits that expand its functionality and greatly streamline molecular animation. The following is a partial list of software suites commonly used in SHOWCASE – CLARAFI A narrated animation depicting the events that lead to Dengue virus entry into a host cell. In particular, rearrangements and conformational changes in the Dengue glycoprotein E are shown. These lead to membrane fusion and subsequent release of the viral payload into the host cell cytoplasm. Created forCOURSES – CLARAFI
Realistic Skin Shading, Lighting, and Rendering in 3ds Max and V-Ray, Adam Lewis, Digital-Tutors. Creating Morph Targets for Facial Animation in 3ds Max and ZBrush, Dani Garcia, Digital-Tutors. Creating a Photorealistic Female Character in ZBrush and 3ds Max, Ruben Karamanites, DigitalCREATE AN ACCOUNT
Account Details. Username (required) Email Address (required) Choose a Password (required) Confirm Password (required) RESOURCES – CLARAFI Resources – Clarafi. Please join the Clarafi community to view thispage.
MMAYA – CLARAFI
mMaya – Clarafi. Molecular Maya (mMaya) is a free plugin for Autodesk Maya that lets users import, model and animate molecular structures. We leverage the power and flexibility of Maya while offering innovative, intuitive tools specialized for the challenges of molecular modeling and animation. mMaya is further enhanced by aseries of 'kits
INTRODUCTION TO MOLECULAR MAYA DSDNA KIT Molecular Maya’s (mMaya) double-stranded DNA (dsDNA) kit automates the modeling, animation and visualization of structurally-accurate dsDNA. This course serves as an introduction to the kit and all its basic functionalities. We’ll begin with de novo modeling of dsDNA starting from a base-pair count, a DNA sequence or a custom- and/orPDB
BRINGING CORALS TO LIFE: BUILDING DYNAMIC RIGS FOR Building custom rigs demands a deep understanding of the Maya rigging and animation toolkit. This tutorial takes you through my process for creating a rig to animate a coral polyp that blends direct keyframe control with organic Maya Nucleus dynamic motion. The chapters in this tutorial go step by step through the process from building the ETSUKO UNO – CLARAFI The Origin of Breast Cancer | Drew Berry, Etsuko Uno. This animation visualises research published in Nature Medicine (Vol 15, Issue 8, 2009) by the laboratory of Jane Visvader and Geoffrey Lindeman. The mammary gland is comprised of three main cell types; alveolar, ductal and myoepithelial cells. Breast stem cells can develop into any of the CLARAFI – SCIENCE VISUALIZATION MADE CLEARTOOLSSHOWCASECOURSESCAREERSRESOURCESJOIN Clarafi is a community of scientists, graphics professionals, students and educators interested in scientific visualization. We aim to transform our understanding and teaching of science through our community resources and facilitate the creation of accurate visualizations through intuitive software tools and high qualityinstruction.
TOOLS – CLARAFI
featured tools. Clarafi is the home of Molecular Maya (mMaya), a free Maya plugin that lets users import, model and animate molecular structures. mMaya is enhanced by a series of kits that expand its functionality and greatly streamline molecular animation. The following is a partial list of software suites commonly used in SHOWCASE – CLARAFI A narrated animation depicting the events that lead to Dengue virus entry into a host cell. In particular, rearrangements and conformational changes in the Dengue glycoprotein E are shown. These lead to membrane fusion and subsequent release of the viral payload into the host cell cytoplasm. Created forCOURSES – CLARAFI
Realistic Skin Shading, Lighting, and Rendering in 3ds Max and V-Ray, Adam Lewis, Digital-Tutors. Creating Morph Targets for Facial Animation in 3ds Max and ZBrush, Dani Garcia, Digital-Tutors. Creating a Photorealistic Female Character in ZBrush and 3ds Max, Ruben Karamanites, DigitalCREATE AN ACCOUNT
Account Details. Username (required) Email Address (required) Choose a Password (required) Confirm Password (required) RESOURCES – CLARAFI Resources – Clarafi. Please join the Clarafi community to view thispage.
MMAYA – CLARAFI
mMaya – Clarafi. Molecular Maya (mMaya) is a free plugin for Autodesk Maya that lets users import, model and animate molecular structures. We leverage the power and flexibility of Maya while offering innovative, intuitive tools specialized for the challenges of molecular modeling and animation. mMaya is further enhanced by aseries of 'kits
INTRODUCTION TO MOLECULAR MAYA DSDNA KIT Molecular Maya’s (mMaya) double-stranded DNA (dsDNA) kit automates the modeling, animation and visualization of structurally-accurate dsDNA. This course serves as an introduction to the kit and all its basic functionalities. We’ll begin with de novo modeling of dsDNA starting from a base-pair count, a DNA sequence or a custom- and/orPDB
BRINGING CORALS TO LIFE: BUILDING DYNAMIC RIGS FOR Building custom rigs demands a deep understanding of the Maya rigging and animation toolkit. This tutorial takes you through my process for creating a rig to animate a coral polyp that blends direct keyframe control with organic Maya Nucleus dynamic motion. The chapters in this tutorial go step by step through the process from building the ETSUKO UNO – CLARAFI The Origin of Breast Cancer | Drew Berry, Etsuko Uno. This animation visualises research published in Nature Medicine (Vol 15, Issue 8, 2009) by the laboratory of Jane Visvader and Geoffrey Lindeman. The mammary gland is comprised of three main cell types; alveolar, ductal and myoepithelial cells. Breast stem cells can develop into any of the RESOURCES – CLARAFI Resources – Clarafi. Please join the Clarafi community to view thispage.
CAREERS – CLARAFI
Scientific visualization is a field in full expansion with a range of possible career paths and opportunities. This section lists prominent training programs, compiles career-oriented articles on scientific visualization and offers a growing collection of interviews and profiles created for Clarafi. CREATING WEB-BASED INTERACTIVE MOLECULAR VISUALIZATIONS Creating Web-Based Interactive Molecular Visualizations – Clarafi. 3D animation software empowers scientific illustrators and animators to create stunning visualizations of the molecular world. While animations can be an efficient and eye-catching way of communicating scientific findings, they do not let the audience interact and explorethe
PROTEIN FOLDING & STABILITY Protein Folding & Stability What is a Protein? | Maria Voigt. This animation from the Protein Data Bank guides us through the world of protein, which play countless roles throughout the biological world from catalyzing chemical reactions to building the structures of allliving things.
INTRODUCTION TO MOLECULAR MAYA MODELING KIT Molecular Maya’s (mMaya) Modeling kit facilitates many of the challenges in the modeling of high-quality full-length protein models. Incomplete structural data often require us to create structural fragments based on primary sequence and then pose and connect these peptide fragments to existing structures. THE MAKING OF APOPTOSOME A behind-the-scenes look at how we created our 2013 Apoptosome Assembly animation for Cell Signaling Technologies, with step-by-step tutorials that cover key concepts including research and pre-production, construction of complete protein models from available 3D structural data as well as missing data, and compositing techniques used to avoid split-attention issues. INTRODUCTION TO MOLECULAR MAYA RIGGING KIT Introduction to Molecular Maya Rigging Kit – Clarafi. Molecular Maya’s (mMaya) Rigging kit automates the modeling, rigging, simulation and visualization of macromolecules. A rig is a virtual skeleton that controls the range of dynamic motion of a 3D model. In the case of macromolecules like proteins, this can be an incrediblychallenging task.
MODO FOR SCIENTIFIC VISUALIZATION: HARDSURFACE MODELING MODO for Scientific Visualization: Hardsurface Modeling – Clarafi. This tutorial introduces The Foundry’s MODO as a tool for hard-surface modeling. We assume some basic knowledge of 3D modeling, but no. experience with MODO. This tutorial provides a broad overview of MODO’s. modeling interface, then uses a few fundamental tools tobox
ILLUSTRATOR FOR SCIENTIFIC VISUALIZATION I Illustrator for Scientific Visualization I. This tutorial demonstrates beginner-level tools in Adobe Illustrator that support data visualization. We’ll walk through the creation of a poster and the placement of customized data plots, charts, and graphics. The tutorial is parsed so that each chapter tackles a specific tool or function,making
JAMES PERKINS, MS, MFA, CMI James Perkins, MA, MS, CMI Medical Illustrator, Academic Career Profile. Please introduce yourself (what is your current training/educational status and/or where do you work?) and share with us how you decided to get into scientific visualization. CLARAFI – SCIENCE VISUALIZATION MADE CLEARTOOLSSHOWCASECOURSESCAREERSRESOURCESJOIN Clarafi is a community of scientists, graphics professionals, students and educators interested in scientific visualization. We aim to transform our understanding and teaching of science through our community resources and facilitate the creation of accurate visualizations through intuitive software tools and high qualityinstruction.
SHOWCASE – CLARAFI A narrated animation depicting the events that lead to Dengue virus entry into a host cell. In particular, rearrangements and conformational changes in the Dengue glycoprotein E are shown. These lead to membrane fusion and subsequent release of the viral payload into the host cell cytoplasm. Created for RESOURCES – CLARAFI Resources – Clarafi. Please join the Clarafi community to view thispage.
MMAYA – CLARAFI
mMaya – Clarafi. Molecular Maya (mMaya) is a free plugin for Autodesk Maya that lets users import, model and animate molecular structures. We leverage the power and flexibility of Maya while offering innovative, intuitive tools specialized for the challenges of molecular modeling and animation. mMaya is further enhanced by aseries of 'kits
CAREERS – CLARAFI
Scientific visualization is a field in full expansion with a range of possible career paths and opportunities. This section lists prominent training programs, compiles career-oriented articles on scientific visualization and offers a growing collection of interviews and profiles created for Clarafi. INTRODUCTION TO MOLECULAR MAYA DSDNA KIT Molecular Maya’s (mMaya) double-stranded DNA (dsDNA) kit automates the modeling, animation and visualization of structurally-accurate dsDNA. This course serves as an introduction to the kit and all its basic functionalities. We’ll begin with de novo modeling of dsDNA starting from a base-pair count, a DNA sequence or a custom- and/orPDB
BRINGING CORALS TO LIFE: BUILDING DYNAMIC RIGS FOR Building custom rigs demands a deep understanding of the Maya rigging and animation toolkit. This tutorial takes you through my process for creating a rig to animate a coral polyp that blends direct keyframe control with organic Maya Nucleus dynamic motion. The chapters in this tutorial go step by step through the process from building the INTRODUCTION TO MOLECULAR MAYA MODELING KIT Molecular Maya’s (mMaya) Modeling kit facilitates many of the challenges in the modeling of high-quality full-length protein models. Incomplete structural data often require us to create structural fragments based on primary sequence and then pose and connect these peptide fragments to existing structures.TAMI TOLPA, MFA
My name is Tami Tolpa, and I’m owner and principal of Tolpa Studios, Inc. where I create illustrations and animations for a variety of clients, including: science magazines, biotech companies, scientists and physicians, medical centers, and creative agencies that specialize in biomedical clients. I decided to pursue medical illustration after JAMES PERKINS, MS, MFA, CMI It shows the chemotherapy drug docetaxel (Taxotere®) binding to the protein beta-tubulin, part of the alpha-beta tubulin dimer that makes up microtubules. The drug prevents the breakdown of the mitotic spindle, arresting dividing cells in metaphase. Sample 2 – Nicotinic Acetylcholine Receptor. This shows the structure and action of the CLARAFI – SCIENCE VISUALIZATION MADE CLEARTOOLSSHOWCASECOURSESCAREERSRESOURCESJOIN Clarafi is a community of scientists, graphics professionals, students and educators interested in scientific visualization. We aim to transform our understanding and teaching of science through our community resources and facilitate the creation of accurate visualizations through intuitive software tools and high qualityinstruction.
SHOWCASE – CLARAFI A narrated animation depicting the events that lead to Dengue virus entry into a host cell. In particular, rearrangements and conformational changes in the Dengue glycoprotein E are shown. These lead to membrane fusion and subsequent release of the viral payload into the host cell cytoplasm. Created for RESOURCES – CLARAFI Resources – Clarafi. Please join the Clarafi community to view thispage.
MMAYA – CLARAFI
mMaya – Clarafi. Molecular Maya (mMaya) is a free plugin for Autodesk Maya that lets users import, model and animate molecular structures. We leverage the power and flexibility of Maya while offering innovative, intuitive tools specialized for the challenges of molecular modeling and animation. mMaya is further enhanced by aseries of 'kits
CAREERS – CLARAFI
Scientific visualization is a field in full expansion with a range of possible career paths and opportunities. This section lists prominent training programs, compiles career-oriented articles on scientific visualization and offers a growing collection of interviews and profiles created for Clarafi. INTRODUCTION TO MOLECULAR MAYA DSDNA KIT Molecular Maya’s (mMaya) double-stranded DNA (dsDNA) kit automates the modeling, animation and visualization of structurally-accurate dsDNA. This course serves as an introduction to the kit and all its basic functionalities. We’ll begin with de novo modeling of dsDNA starting from a base-pair count, a DNA sequence or a custom- and/orPDB
BRINGING CORALS TO LIFE: BUILDING DYNAMIC RIGS FOR Building custom rigs demands a deep understanding of the Maya rigging and animation toolkit. This tutorial takes you through my process for creating a rig to animate a coral polyp that blends direct keyframe control with organic Maya Nucleus dynamic motion. The chapters in this tutorial go step by step through the process from building the INTRODUCTION TO MOLECULAR MAYA MODELING KIT Molecular Maya’s (mMaya) Modeling kit facilitates many of the challenges in the modeling of high-quality full-length protein models. Incomplete structural data often require us to create structural fragments based on primary sequence and then pose and connect these peptide fragments to existing structures.TAMI TOLPA, MFA
My name is Tami Tolpa, and I’m owner and principal of Tolpa Studios, Inc. where I create illustrations and animations for a variety of clients, including: science magazines, biotech companies, scientists and physicians, medical centers, and creative agencies that specialize in biomedical clients. I decided to pursue medical illustration after JAMES PERKINS, MS, MFA, CMI It shows the chemotherapy drug docetaxel (Taxotere®) binding to the protein beta-tubulin, part of the alpha-beta tubulin dimer that makes up microtubules. The drug prevents the breakdown of the mitotic spindle, arresting dividing cells in metaphase. Sample 2 – Nicotinic Acetylcholine Receptor. This shows the structure and action of theTOOLS – CLARAFI
featured tools. Clarafi is the home of Molecular Maya (mMaya), a free Maya plugin that lets users import, model and animate molecular structures. mMaya is enhanced by a series of kits that expand its functionality and greatly streamline molecular animation. The following is a partial list of software suites commonly used inCREATE AN ACCOUNT
Account Details. Username (required) Email Address (required) Choose a Password (required) Confirm Password (required)KIT INSTALLATION
Kit Installation – Clarafi. Kits live within Molecular Maya (mMaya). In order to use a kit, the base, free mMaya must be installed. Once a mMaya kit has been purchased on Clarafi.com, in order to retrieve your kit you use mMaya’s built-in updating and installation system. This is found at the foot of the ‘mMaya Editor’, within Maya. PHOTOSHOP FOR SCIENTIFIC VISUALIZATION Clarafi. This tutorial series explores beginner and intermediate-level Photoshop tools. For our beginner-level Photoshoppers, the chapters take you step-by-step through three mini-projects. We start with basic document creation, and move onwards to more and more advanced tools as CREATING WEB-BASED INTERACTIVE MOLECULAR VISUALIZATIONS Creating Web-Based Interactive Molecular Visualizations – Clarafi. 3D animation software empowers scientific illustrators and animators to create stunning visualizations of the molecular world. While animations can be an efficient and eye-catching way of communicating scientific findings, they do not let the audience interact and explorethe
THE MAKING OF APOPTOSOME A behind-the-scenes look at how we created our 2013 Apoptosome Assembly animation for Cell Signaling Technologies, with step-by-step tutorials that cover key concepts including research and pre-production, construction of complete protein models from available 3D structural data as well as missing data, and compositing techniques used to avoid split-attention issues. PROTEIN FOLDING & STABILITY Protein Folding & Stability What is a Protein? | Maria Voigt. This animation from the Protein Data Bank guides us through the world of protein, which play countless roles throughout the biological world from catalyzing chemical reactions to building the structures of allliving things.
TETHERING A TRANSCRIPTION FACTOR TO DYNAMIC DNA Using Molecular Maya (mMaya) and the dsDNA kit, this short tutorial explains how to convert an imported co-crystal structure of a protein bound to DNA (in this case a PDB of Myc:Max:DNA) into a dynamic animation where the protein dimer is tethered to an extended strand ofsimulated DNA.
DENGUE VIRUS ENTRY
Dengue Virus Entry. A narrated animation depicting the events that lead to Dengue virus entry into a host cell. In particular, rearrangements and conformational changes in the Dengue glycoprotein E are shown. These lead to membrane fusion and subsequent release of the viral payload into the host cell cytoplasm. Created for WGBH. JAMES PERKINS, MS, MFA, CMI James Perkins, MA, MS, CMI Medical Illustrator, Academic Career Profile. Please introduce yourself (what is your current training/educational status and/or where do you work?) and share with us how you decided to get into scientific visualization. CLARAFI – SCIENCE VISUALIZATION MADE CLEARTOOLSSHOWCASECOURSESCAREERSRESOURCESJOIN Clarafi is a community of scientists, graphics professionals, students and educators interested in scientific visualization. We aim to transform our understanding and teaching of science through our community resources and facilitate the creation of accurate visualizations through intuitive software tools and high qualityinstruction.
SHOWCASE – CLARAFI A narrated animation depicting the events that lead to Dengue virus entry into a host cell. In particular, rearrangements and conformational changes in the Dengue glycoprotein E are shown. These lead to membrane fusion and subsequent release of the viral payload into the host cell cytoplasm. Created for RESOURCES – CLARAFI Resources – Clarafi. Please join the Clarafi community to view thispage.
MMAYA – CLARAFI
mMaya – Clarafi. Molecular Maya (mMaya) is a free plugin for Autodesk Maya that lets users import, model and animate molecular structures. We leverage the power and flexibility of Maya while offering innovative, intuitive tools specialized for the challenges of molecular modeling and animation. mMaya is further enhanced by aseries of 'kits
CAREERS – CLARAFI
Scientific visualization is a field in full expansion with a range of possible career paths and opportunities. This section lists prominent training programs, compiles career-oriented articles on scientific visualization and offers a growing collection of interviews and profiles created for Clarafi. INTRODUCTION TO MOLECULAR MAYA DSDNA KIT Molecular Maya’s (mMaya) double-stranded DNA (dsDNA) kit automates the modeling, animation and visualization of structurally-accurate dsDNA. This course serves as an introduction to the kit and all its basic functionalities. We’ll begin with de novo modeling of dsDNA starting from a base-pair count, a DNA sequence or a custom- and/orPDB
BRINGING CORALS TO LIFE: BUILDING DYNAMIC RIGS FOR Building custom rigs demands a deep understanding of the Maya rigging and animation toolkit. This tutorial takes you through my process for creating a rig to animate a coral polyp that blends direct keyframe control with organic Maya Nucleus dynamic motion. The chapters in this tutorial go step by step through the process from building the INTRODUCTION TO MOLECULAR MAYA MODELING KIT Molecular Maya’s (mMaya) Modeling kit facilitates many of the challenges in the modeling of high-quality full-length protein models. Incomplete structural data often require us to create structural fragments based on primary sequence and then pose and connect these peptide fragments to existing structures.TAMI TOLPA, MFA
My name is Tami Tolpa, and I’m owner and principal of Tolpa Studios, Inc. where I create illustrations and animations for a variety of clients, including: science magazines, biotech companies, scientists and physicians, medical centers, and creative agencies that specialize in biomedical clients. I decided to pursue medical illustration after JAMES PERKINS, MS, MFA, CMI It shows the chemotherapy drug docetaxel (Taxotere®) binding to the protein beta-tubulin, part of the alpha-beta tubulin dimer that makes up microtubules. The drug prevents the breakdown of the mitotic spindle, arresting dividing cells in metaphase. Sample 2 – Nicotinic Acetylcholine Receptor. This shows the structure and action of the CLARAFI – SCIENCE VISUALIZATION MADE CLEARTOOLSSHOWCASECOURSESCAREERSRESOURCESJOIN Clarafi is a community of scientists, graphics professionals, students and educators interested in scientific visualization. We aim to transform our understanding and teaching of science through our community resources and facilitate the creation of accurate visualizations through intuitive software tools and high qualityinstruction.
SHOWCASE – CLARAFI A narrated animation depicting the events that lead to Dengue virus entry into a host cell. In particular, rearrangements and conformational changes in the Dengue glycoprotein E are shown. These lead to membrane fusion and subsequent release of the viral payload into the host cell cytoplasm. Created for RESOURCES – CLARAFI Resources – Clarafi. Please join the Clarafi community to view thispage.
MMAYA – CLARAFI
mMaya – Clarafi. Molecular Maya (mMaya) is a free plugin for Autodesk Maya that lets users import, model and animate molecular structures. We leverage the power and flexibility of Maya while offering innovative, intuitive tools specialized for the challenges of molecular modeling and animation. mMaya is further enhanced by aseries of 'kits
CAREERS – CLARAFI
Scientific visualization is a field in full expansion with a range of possible career paths and opportunities. This section lists prominent training programs, compiles career-oriented articles on scientific visualization and offers a growing collection of interviews and profiles created for Clarafi. INTRODUCTION TO MOLECULAR MAYA DSDNA KIT Molecular Maya’s (mMaya) double-stranded DNA (dsDNA) kit automates the modeling, animation and visualization of structurally-accurate dsDNA. This course serves as an introduction to the kit and all its basic functionalities. We’ll begin with de novo modeling of dsDNA starting from a base-pair count, a DNA sequence or a custom- and/orPDB
BRINGING CORALS TO LIFE: BUILDING DYNAMIC RIGS FOR Building custom rigs demands a deep understanding of the Maya rigging and animation toolkit. This tutorial takes you through my process for creating a rig to animate a coral polyp that blends direct keyframe control with organic Maya Nucleus dynamic motion. The chapters in this tutorial go step by step through the process from building the INTRODUCTION TO MOLECULAR MAYA MODELING KIT Molecular Maya’s (mMaya) Modeling kit facilitates many of the challenges in the modeling of high-quality full-length protein models. Incomplete structural data often require us to create structural fragments based on primary sequence and then pose and connect these peptide fragments to existing structures.TAMI TOLPA, MFA
My name is Tami Tolpa, and I’m owner and principal of Tolpa Studios, Inc. where I create illustrations and animations for a variety of clients, including: science magazines, biotech companies, scientists and physicians, medical centers, and creative agencies that specialize in biomedical clients. I decided to pursue medical illustration after JAMES PERKINS, MS, MFA, CMI It shows the chemotherapy drug docetaxel (Taxotere®) binding to the protein beta-tubulin, part of the alpha-beta tubulin dimer that makes up microtubules. The drug prevents the breakdown of the mitotic spindle, arresting dividing cells in metaphase. Sample 2 – Nicotinic Acetylcholine Receptor. This shows the structure and action of theTOOLS – CLARAFI
featured tools. Clarafi is the home of Molecular Maya (mMaya), a free Maya plugin that lets users import, model and animate molecular structures. mMaya is enhanced by a series of kits that expand its functionality and greatly streamline molecular animation. The following is a partial list of software suites commonly used inCREATE AN ACCOUNT
Account Details. Username (required) Email Address (required) Choose a Password (required) Confirm Password (required)KIT INSTALLATION
Kit Installation – Clarafi. Kits live within Molecular Maya (mMaya). In order to use a kit, the base, free mMaya must be installed. Once a mMaya kit has been purchased on Clarafi.com, in order to retrieve your kit you use mMaya’s built-in updating and installation system. This is found at the foot of the ‘mMaya Editor’, within Maya. PHOTOSHOP FOR SCIENTIFIC VISUALIZATION Clarafi. This tutorial series explores beginner and intermediate-level Photoshop tools. For our beginner-level Photoshoppers, the chapters take you step-by-step through three mini-projects. We start with basic document creation, and move onwards to more and more advanced tools as CREATING WEB-BASED INTERACTIVE MOLECULAR VISUALIZATIONS Creating Web-Based Interactive Molecular Visualizations – Clarafi. 3D animation software empowers scientific illustrators and animators to create stunning visualizations of the molecular world. While animations can be an efficient and eye-catching way of communicating scientific findings, they do not let the audience interact and explorethe
THE MAKING OF APOPTOSOME A behind-the-scenes look at how we created our 2013 Apoptosome Assembly animation for Cell Signaling Technologies, with step-by-step tutorials that cover key concepts including research and pre-production, construction of complete protein models from available 3D structural data as well as missing data, and compositing techniques used to avoid split-attention issues. PROTEIN FOLDING & STABILITY Protein Folding & Stability What is a Protein? | Maria Voigt. This animation from the Protein Data Bank guides us through the world of protein, which play countless roles throughout the biological world from catalyzing chemical reactions to building the structures of allliving things.
TETHERING A TRANSCRIPTION FACTOR TO DYNAMIC DNA Using Molecular Maya (mMaya) and the dsDNA kit, this short tutorial explains how to convert an imported co-crystal structure of a protein bound to DNA (in this case a PDB of Myc:Max:DNA) into a dynamic animation where the protein dimer is tethered to an extended strand ofsimulated DNA.
DENGUE VIRUS ENTRY
Dengue Virus Entry. A narrated animation depicting the events that lead to Dengue virus entry into a host cell. In particular, rearrangements and conformational changes in the Dengue glycoprotein E are shown. These lead to membrane fusion and subsequent release of the viral payload into the host cell cytoplasm. Created for WGBH. JAMES PERKINS, MS, MFA, CMI James Perkins, MA, MS, CMI Medical Illustrator, Academic Career Profile. Please introduce yourself (what is your current training/educational status and/or where do you work?) and share with us how you decided to get into scientific visualization.Skip to content
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SCIENCE VISUALIZATION MADE CLEAR*
Gaël McGill, Ph.D.
Introduction to Molecular Maya Modeling Kit*
mMaya Molecular Modeling Kit Model, Pose & Export Macromolecular Structures*
Introduction to Molecular Maya Rigging KitGaël McGill, Ph.D.
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Rigging Kit
Automated molecular rigging & morphing*
Introduction to iBooks AuthorJeannie Park
The Making of E.O. Wilson's _Life on Earth_*
Introduction to Molecular Maya dsDNA KitGaël McGill, Ph.D.
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Double-Stranded DNA (dsDNA) Kit Automate the modeling, animation and visualization of structurally-accurate dsDNA*
Creating Web-Based Interactive Molecular Visualizations Samuel Hertig, Ph.D.*
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Modo for Scientific Visualization: Hardsurface ModelingEvan Ingersoll
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Modo for Scientific Visualization: Photorealistic RenderingEvan Ingersoll
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Modo for Scientific Visualization: Rigging and AnimationEric Keller
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Storyboarding for
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Evan Ingersoll
Maya nParticles
Controlling & Simulating 3D Fluids:*
Controlling & Simulating 3D Fluids: Eric Keller & Rachel Davidowitz, Ph.D. Maya Fluids & Bifrost*
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The Making of E.O. Wilson's _Life on Earth_ Advanced iBook Widget Designwith Maya nDynamics
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Cytoskeleton Kit
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Bringing Corals to LifeEric Keller
Building Dynamic Rigs for Animation in Maya*
Design Principles
Geoffrey Cheung
for Data Presentation*
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From Structural Data to 3D Animation Software Rachel Davidowitz, Ph.D. Introduction to Chimera, Pymol, and VMD for Preproduction*
Photoshop for
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